BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1330.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310819|ref|YP_003774911.1| nitrate/sulfonate/bicarbonate A...   567   e-163

>gi|300310819|ref|YP_003774911.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score =  567 bits (1461), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 271/319 (84%), Positives = 298/319 (93%)

Query: 1   VTYSTVSPQRRKLLLGAASLLAAGAAPALPALAQGAPILIGVGADPVFTAFYVAANEKLF 60
           +T+ST SP RRKLLLGAAS+LAAGA PA+PALAQGAP+ IGVGADPVFTAF+VAANEKLF
Sbjct: 1   MTHSTPSPHRRKLLLGAASMLAAGALPAVPALAQGAPVTIGVGADPVFTAFFVAANEKLF 60

Query: 61  AKHGVPNVSVQSYTDGGEALNALVANQVQLGCAGEPTHIVRLSRAELRPLAVTYQSRTYV 120
           AK+G PNVSVQSYTDGGEALNALVANQV LGCAGEPTHIVRL+RAELRPLAVTYQSRTY+
Sbjct: 61  AKYGAPNVSVQSYTDGGEALNALVANQVNLGCAGEPTHIVRLARAELRPLAVTYQSRTYL 120

Query: 121 KLVARKDIATVDKIKKFGIVAGSVSEYVTGLTLKTLNIDPAKVELVRSGPPELPALLARG 180
           KLVARKDIAT DKI+KFGIV GSVSEYVTGLT++ L +D +K+E+VRSGPPELPALLARG
Sbjct: 121 KLVARKDIATADKIRKFGIVVGSVSEYVTGLTIRQLKLDASKIEMVRSGPPELPALLARG 180

Query: 181 DIDAYFVWEPWPTLGVQQGGHILMTAGDVGYTSTLWLSASASWLAANKEAAGKILKALAE 240
           DIDAYFVWEPWPTLGVQQGGHILMT GDVGYTSTLWLSA+A WLAANKE AG+ILKALAE
Sbjct: 181 DIDAYFVWEPWPTLGVQQGGHILMTCGDVGYTSTLWLSATAPWLAANKEVAGRILKALAE 240

Query: 241 ASEITRKDPARAAKSVQAVTHIPVAQTLNSLKDMEPVVRDFTDTDLKTANAIADFLLSKQ 300
           A+EITRKDP RAA+SVQA+T IP+ QTLNSLKDMEPVVRDF+DTDL TANAI +FLLS+Q
Sbjct: 241 AAEITRKDPPRAAQSVQAITRIPIPQTLNSLKDMEPVVRDFSDTDLATANAIGEFLLSRQ 300

Query: 301 AIKTPVDMSKILQRGFYQG 319
           AIK PVDM K+LQRGFY+G
Sbjct: 301 AIKAPVDMGKVLQRGFYKG 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 806,286
Number of extensions: 29493
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)