BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1329.p (265 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 478 e-136 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 218 6e-58 gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate A... 190 1e-49 gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 185 3e-48 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 185 4e-48 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 478 bits (1231), Expect = e-136, Method: Compositional matrix adjust. Identities = 240/265 (90%), Positives = 258/265 (97%) Query: 1 MGHGSSVSIKRVGLSIGKHEIMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEVSG 60 M HGSSVS+KRVGL+IG ++IMAGIDLDIRAGEF+CLLGPSGCGKSTLLNAIAGFQ+VSG Sbjct: 1 MAHGSSVSLKRVGLTIGSNDIMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDVSG 60 Query: 61 EISIGGQRIKGPGLDRGVVFQSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSL 120 EIS+ G+R+KGPGLDRGVVFQSSEALFPWL+VRENVEYGL+LRG+ASAERR AAERYVSL Sbjct: 61 EISVDGKRVKGPGLDRGVVFQSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSL 120 Query: 121 VGLRHAIDKFPGELSGGMRQRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIW 180 VGL+HAIDKFP ELSGGMRQRAQIARVLVN+PSVVLMDEPFGALDAQTREVLQSEL+RIW Sbjct: 121 VGLKHAIDKFPAELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIW 180 Query: 181 KSTGCTIVFVTHDIWEAILLADRVVTMTAGPRAHIKTIETVDLPHPRDPADPACMALYAR 240 KSTGCTIVFVTHDIWEAILLADRVVTMTAGPRAHIKTIE V LPHPRDPADPACMALYAR Sbjct: 181 KSTGCTIVFVTHDIWEAILLADRVVTMTAGPRAHIKTIEEVHLPHPRDPADPACMALYAR 240 Query: 241 IRDDIGAEVTRVLRAQGLIEEESLQ 265 IRDDIGAEVTRVLRAQGL+EEES++ Sbjct: 241 IRDDIGAEVTRVLRAQGLLEEESVK 265 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 218 bits (554), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 119/217 (54%), Positives = 142/217 (65%), Gaps = 3/217 (1%) Query: 22 MAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQ-EVSGEISIGGQRIKGPGLDRGVVF 80 + I+LDI G+F+CLLGPSGCGKSTLLNAIAGF SG+I + + PG DRG+VF Sbjct: 29 LKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMVF 88 Query: 81 QSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSLVGLRHAIDKFPGELSGGMRQ 140 Q ALFPW+TV +NV +GL ++G AE + + +GL +FP +LSGGMRQ Sbjct: 89 QEY-ALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQ 147 Query: 141 RAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCTIVFVTHDIWEAILL 200 R IARVL ++LMDEPFGALDA TR LQ EL RIW TIVFVTH I EAI L Sbjct: 148 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYL 207 Query: 201 ADRVVTMTAGPRAHIKTIETVDLPHPRDPADPACMAL 237 ADR+V MT P +K V+LP RDPADP AL Sbjct: 208 ADRIVVMTYRP-GTVKRDMLVNLPRLRDPADPEFNAL 243 >gi|300311841|ref|YP_003775933.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 263 Score = 190 bits (483), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 133/207 (64%), Gaps = 11/207 (5%) Query: 25 IDLDIRAGEFICLLGPSGCGKSTLLNAIAGF-QEVSGEISIGGQRIKGPGLDRGVVFQSS 83 + ++ G+ LLGPSGCGKSTLL AI G+ Q SG I + G+ + PG DR +VFQ Sbjct: 40 VSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSGAIRLKGREVHEPGPDRMMVFQEF 99 Query: 84 EALFPWLTVRENVEYGL----RLRGIASAERRTAAERYVSLVGLRHAIDKFPGELSGGMR 139 + L PW TVR+NVE+ L RL+G A+AER AE Y+S VGL ID +P LSGGM+ Sbjct: 100 DQLLPWKTVRQNVEFALHASGRLQGRAAAER---AEYYISKVGLAKFIDSYPHMLSGGMK 156 Query: 140 QRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCTIVFVTHDIWEAIL 199 QR IAR + +P V+LMDEPF ALDA TR +Q EL R+W T T++FVTH I EAI Sbjct: 157 QRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLRLWDDTQFTVLFVTHSIEEAIR 216 Query: 200 LADRVVTMTAGP---RAHIKTIETVDL 223 + R++ +T P RA + +I+ L Sbjct: 217 VGTRILLLTPHPGQVRAELNSIDPSQL 243 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 185 bits (470), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 98/244 (40%), Positives = 152/244 (62%), Gaps = 6/244 (2%) Query: 18 KHEIMAGIDLDIRAGEFICLLGPSGCGKSTLLNAIAGF-QEVSGEISIGGQRIKGPGLDR 76 ++ +A DL I GEF+ ++GP+GCGKSTLLN AG Q SG + + G+ +KG Sbjct: 23 RYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPSSGSVKVFGEELKGINRRA 82 Query: 77 GVVFQSSEALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSLVGLRHAIDKFPGELSG 136 G +FQ+ EAL PW + +NV GL+ RG E++++ VGL+ D++P +LSG Sbjct: 83 GYMFQA-EALMPWRSALQNVIAGLQYRGHEEKAAAELGEQWLARVGLQGFGDRYPHQLSG 141 Query: 137 GMRQRAQIARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCTIVFVTHDIWE 196 GMR+R +A+ L+ P ++LMDEPF ALD QTR+++++E+ +W + ++F+THD+ E Sbjct: 142 GMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLDLWNAKKKAVLFITHDLDE 201 Query: 197 AILLADRVVTMTAGPRAHIKTIETVDLPHPRDPAD----PACMALYARIRDDIGAEVTRV 252 AI ++DRV+ + AGP H +DLP PRD A+ P + L+ +I D + EV + Sbjct: 202 AIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHPRFVELHQQIWDVLRDEVLKG 261 Query: 253 LRAQ 256 + Q Sbjct: 262 YQQQ 265 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 185 bits (469), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/197 (48%), Positives = 127/197 (64%), Gaps = 2/197 (1%) Query: 25 IDLDIRAGEFICLLGPSGCGKSTLLNAIAGFQEVS-GEISIGGQRIKGPGLDRGVVFQSS 83 + LDI G F+ LG SGCGKSTLLNA+AGF +S G IS+ GQ + GPG +RGVVFQ Sbjct: 25 VSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPVSGPGAERGVVFQK- 83 Query: 84 EALFPWLTVRENVEYGLRLRGIASAERRTAAERYVSLVGLRHAIDKFPGELSGGMRQRAQ 143 ++L PW +V++NV GL+ G++ ++ R A+ + LVGL+ P ELSGGMRQR Sbjct: 84 DSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAAPYELSGGMRQRVG 143 Query: 144 IARVLVNQPSVVLMDEPFGALDAQTREVLQSELERIWKSTGCTIVFVTHDIWEAILLADR 203 +AR L P ++LMDEPFGALD+ TRE +Q L +W TG + F+TH I EA+ L Sbjct: 144 LARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFITHSIEEALFLGTE 203 Query: 204 VVTMTAGPRAHIKTIET 220 V+ M+ P + ET Sbjct: 204 VIVMSPRPGRIVARFET 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 854,641 Number of extensions: 35848 Number of successful extensions: 513 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 331 Number of HSP's successfully gapped: 143 Length of query: 265 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 181 Effective length of database: 1,222,130 Effective search space: 221205530 Effective search space used: 221205530 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)