BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1328.p (272 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 469 e-134 gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 129 4e-31 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 103 1e-23 gi|300310541|ref|YP_003774633.1| nitrate transporter permease [H... 102 4e-23 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 95 6e-21 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 469 bits (1207), Expect = e-134, Method: Compositional matrix adjust. Identities = 240/255 (94%), Positives = 249/255 (97%) Query: 18 PSKLGSRVKAARPFLISVIAIVGGLVLWQLVSMTTSPLFLPSVSMTWSAALELISDGTLQ 77 PS LG R+KAARPFLISVIAIVGGLVLWQLVS+TTSPLFLPSVSMTW+AALELISDGTLQ Sbjct: 2 PSNLGRRLKAARPFLISVIAIVGGLVLWQLVSLTTSPLFLPSVSMTWAAALELISDGTLQ 61 Query: 78 QSVLASSCRILAGWGAGVVIGVPLGIFMGRFEIVRQLLDPYIEFFRFIPPIAFVTLAVIW 137 QSVLASS RILAGWGAGVVIGVPLGIFMGRFE VRQLLDPYIEFFRFIPPIAFVTLAVIW Sbjct: 62 QSVLASSGRILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIW 121 Query: 138 LGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGPWKMLTTVILPSTVP 197 LGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAG WK+L+TVILPSTVP Sbjct: 122 LGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVP 181 Query: 198 YMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRIEWVFVGIIALGLLGYLFD 257 +MVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSR EWVFVGIIALG+LGYLFD Sbjct: 182 FMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFD 241 Query: 258 RVLRIATRRLLARYL 272 RVLR+ATR+LLARYL Sbjct: 242 RVLRVATRKLLARYL 256 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 129 bits (323), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 154/277 (55%), Gaps = 9/277 (3%) Query: 1 MTQLTQTATASASASATPSKLGSRVKAARPFLISVIAIVGGLV---LWQLVSMT--TSPL 55 + L +A A A P + R + I+I G+V LW L++ T L Sbjct: 11 LNALRPDPSAQAQADQPPPLVKMRSFGIAEGSTARISIAAGIVILALWWLIAQTGWVPHL 70 Query: 56 FLPSVSMTWSAALELISDG----TLQQSVLASSCRILAGWGAGVVIGVPLGIFMGRFEIV 111 FLP+ + A + DG TL + V AS RIL V++G+P+G+ MG V Sbjct: 71 FLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPVGLLMGLNRWV 130 Query: 112 RQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPL 171 + +LD IEF+ +PP+A++ L +IWLG GE SKI L+ V L+ AGV+++ Sbjct: 131 KGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLPQE 190 Query: 172 RLRAAASLGAGPWKMLTTVILPSTVPYMVTGARIAMGNSFLTVVSAEIVSAREGLGALIW 231 R+ AA SLGA W++LT V+LPS +P ++TG RIA+G + T+V+AE++++ G+G +I Sbjct: 191 RVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAELIASNRGIGYMIM 250 Query: 232 TARNFSRIEWVFVGIIALGLLGYLFDRVLRIATRRLL 268 +A +F + VFVGI + + F +R+ R L+ Sbjct: 251 SASHFLATDAVFVGIALIATCAFAFSYGMRLLERALV 287 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 103 bits (257), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 89/144 (61%) Query: 114 LLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRL 173 L++ ++ R IPPIA++ LA++W G G + LI F V +NTIAGV+ V+ + L Sbjct: 111 LMNLTVQVIRPIPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYL 170 Query: 174 RAAASLGAGPWKMLTTVILPSTVPYMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTA 233 RAA +LGA + V+LP+ VPY+++G RI +G +F+ V+ AE+++ GLG I A Sbjct: 171 RAARNLGASQSTLFLRVMLPAAVPYILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEA 230 Query: 234 RNFSRIEWVFVGIIALGLLGYLFD 257 R + + + G+I +GLLG D Sbjct: 231 REYFWSDKIIAGMITIGLLGLAID 254 >gi|300310541|ref|YP_003774633.1| nitrate transporter permease [Herbaspirillum seropedicae SmR1] Length = 307 Score = 102 bits (253), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 109/198 (55%), Gaps = 7/198 (3%) Query: 45 WQLVSMTTSPLFLPSVSMTWSAAL-------ELISDGTLQQSVLASSCRILAGWGAGVVI 97 WQ++++ TS P V++ + + +D + +VLAS R+ G+G ++ Sbjct: 71 WQIIALKTSSFPTPWVTLKEAGVMFADPFYRNSPNDQGIGWNVLASLQRVGTGFGLAALV 130 Query: 98 GVPLGIFMGRFEIVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIV 157 G+PLG +GR E + ++ P I R + P+A++ + ++ + I IF +++ + Sbjct: 131 GIPLGFAIGRVEFLARMFGPIISLLRPVSPLAWLPIGLLVFKSANPAAIWSIFICSIWPM 190 Query: 158 TLNTIAGVQAVNPLRLRAAASLGAGPWKMLTTVILPSTVPYMVTGARIAMGNSFLTVVSA 217 +NT GVQ V + A L WK+LT ++ PS +PYM+TG R+++G ++L +V+A Sbjct: 191 IINTAVGVQRVPQDYMNVARVLNLSEWKVLTKILFPSVLPYMLTGVRLSIGTAWLVIVAA 250 Query: 218 EIVSAREGLGALIWTARN 235 E+++ G+G +W N Sbjct: 251 EMLTGGVGIGFWVWDEWN 268 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 95.1 bits (235), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 84/270 (31%), Positives = 131/270 (48%), Gaps = 9/270 (3%) Query: 4 LTQTATASASASATPSKLGSRVKAARPFLISVIAIVG------GLVLWQLVSMTT--SPL 55 +T + A A P + ++ KAAR A +G LV W++ + S Sbjct: 1 MTSASNPVAGRVAGPQE-QAKPKAARKSFQPSHAWIGWLLPLLLLVWWEVAAQAGWLSSR 59 Query: 56 FLPSVSMTWSAALELISDGTLQQSVLASSCRILAGWGAGVVIGVPLGIFMGRFEIVRQLL 115 LP AA EL + G L + + SS R +G+ G +G+ LG+ G LL Sbjct: 60 ILPEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAGLGLILGLLSGSLRSAELLL 119 Query: 116 DPYIEFFRFIPPIAFVTLAVIWLGPGELSKIALIFYTTVFIVTLNTIAGVQAVNPLRLRA 175 D ++ R IP +A + L ++W G E +K+ L+ F V LNT G+++V+ + Sbjct: 120 DTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEM 179 Query: 176 AASLGAGPWKMLTTVILPSTVPYMVTGARIAMGNSFLTVVSAEIVSAREGLGALIWTARN 235 A S G W + VILP +P ++ G R A+G ++ ++ AE +SA+ G+G + AR Sbjct: 180 AKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNARE 239 Query: 236 FSRIEWVFVGIIALGLLGYLFDRVLRIATR 265 F + + V VGI+ LLG L D R R Sbjct: 240 FLQTDVVLVGILLYALLGKLADTAARWLER 269 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.139 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 766,463 Number of extensions: 30586 Number of successful extensions: 202 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 17 Length of query: 272 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 188 Effective length of database: 1,222,130 Effective search space: 229760440 Effective search space used: 229760440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)