BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1321.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310809|ref|YP_003774901.1| formate dehydrogenase regulator...   497   e-142

>gi|300310809|ref|YP_003774901.1| formate dehydrogenase regulatory
           subunit [Herbaspirillum seropedicae SmR1]
          Length = 280

 Score =  497 bits (1279), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/284 (88%), Positives = 264/284 (92%), Gaps = 4/284 (1%)

Query: 1   MNTRNSNTRNSGPVIDEASGDYATFAHVQVDRWRDGQRETVDDVVAEEVPIALEYNGISH 60
           MNT    ++ S P+ID+++GDYATF HVQVDRWRDGQRETV+DVVAEEVPIALEYNGISH
Sbjct: 1   MNT----SKPSSPLIDDSTGDYATFTHVQVDRWRDGQRETVEDVVAEEVPIALEYNGISH 56

Query: 61  AVMMATPTDLEDFALGFSLTEGILAAPGELYECEILPGCEGVQVQMRIATERFVALKEKR 120
           AVMMATP DLEDFALGFSLTEGILA P ELYECEI+PGCEGVQVQMRIATERFVALKEKR
Sbjct: 57  AVMMATPADLEDFALGFSLTEGILADPSELYECEIVPGCEGVQVQMRIATERFVALKEKR 116

Query: 121 RNLTGRTGCGLCGAETLEQAVRHPQAVAAGALFTVQQVHAAFEQMQSRQQLQQVTGATHA 180
           RNLTGRTGCGLCGAETLEQAVRHPQAV  GA F+VQQVHAAFEQMQ+ QQLQQ TGATHA
Sbjct: 117 RNLTGRTGCGLCGAETLEQAVRHPQAVQGGASFSVQQVHAAFEQMQAGQQLQQATGATHA 176

Query: 181 AAWMDVEGRIVLVREDVGRHNALDKLIGALAQEGADFSQGAAIITSRASYEMVQKAATVG 240
           AAWMD  GRIVLVREDVGRHNALDKLIGALA+EG DF+QGAAIITSRASYEMVQKAATVG
Sbjct: 177 AAWMDASGRIVLVREDVGRHNALDKLIGALAEEGEDFAQGAAIITSRASYEMVQKAATVG 236

Query: 241 IGFIAAVSAPTALAIRLAEETDVTLLGFVRKQGHVVYARPQRLR 284
           I FIAAVSAPTALAIRLAEETDVTLLGFVRKQGHVVYARP RLR
Sbjct: 237 ISFIAAVSAPTALAIRLAEETDVTLLGFVRKQGHVVYARPHRLR 280


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 892,803
Number of extensions: 36403
Number of successful extensions: 158
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)