BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1320.p (965 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310808|ref|YP_003774900.1| NAD-dependent formate dehydroge... 1963 0.0 gi|300312208|ref|YP_003776300.1| assimilatory nitrate reductase ... 290 3e-79 gi|300311101|ref|YP_003775193.1| NADH dehydrogenase I subunit G ... 205 1e-53 gi|300311015|ref|YP_003775107.1| anaerobic (selenocysteine-conta... 145 2e-35 gi|300310774|ref|YP_003774866.1| anaerobic formate dehydrogenase... 126 7e-30 >gi|300310808|ref|YP_003774900.1| NAD-dependent formate dehydrogenase subunit alpha [Herbaspirillum seropedicae SmR1] Length = 957 Score = 1963 bits (5085), Expect = 0.0, Method: Compositional matrix adjust. Identities = 935/965 (96%), Positives = 945/965 (97%), Gaps = 8/965 (0%) Query: 1 MNQLNETDYGTPARASEQMVTLEIDGVQVTVPAGTSVMRASVEAGINVPKLCATDSLEPF 60 MNQLNETDYGTPARAS+ MVTLEIDGV VTVPAGTSVMRASVEAGINVPKLCATDSLEPF Sbjct: 1 MNQLNETDYGTPARASDNMVTLEIDGVAVTVPAGTSVMRASVEAGINVPKLCATDSLEPF 60 Query: 61 GSCRLCLVEIEKDGRRMKGYPASCTTPCEPGMKVQTQTPKLAEIRRGVMELYISDHPLDC 120 GSCRLCLVEIEKDGR+MKGYPASCTTPCEPGMKVQTQTPKLAEIRRGVMELYISDHPLDC Sbjct: 61 GSCRLCLVEIEKDGRKMKGYPASCTTPCEPGMKVQTQTPKLAEIRRGVMELYISDHPLDC 120 Query: 121 LTCPTNGNCELQDMAGVVGLREVRYGYEGENHTKMKKDESNPYFTYDPSKCIVCNRCVRA 180 LTCPTNGNCELQDMAGVVGLREVRYGYEGENHTKMKKDESNPYFTYDPSKCIVCNRCVRA Sbjct: 121 LTCPTNGNCELQDMAGVVGLREVRYGYEGENHTKMKKDESNPYFTYDPSKCIVCNRCVRA 180 Query: 181 CEETQGTFALTINGRGFESRVSAGQMDTFMESECVSCGACVEACPTATLTEKTVIMLGQA 240 CEETQGTFALTINGRGFESRVSAGQM+ FMESECVSCGACVEACPTATLTEKTVIMLGQA Sbjct: 181 CEETQGTFALTINGRGFESRVSAGQMEAFMESECVSCGACVEACPTATLTEKTVIMLGQA 240 Query: 241 EHSKVTTCAYCGVGCSFKAEMKGNEVVRMVPYKDGKANQGHSCVKGRFAWGYATHKDRIL 300 EHSKVTTCAYCGVGCSFKAEMKGNEVVRMVPYKDGKANQGHSCVKGRFAWGYATHKDRIL Sbjct: 241 EHSKVTTCAYCGVGCSFKAEMKGNEVVRMVPYKDGKANQGHSCVKGRFAWGYATHKDRIL 300 Query: 301 NPMIRKSINDPWREVSWEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYLVQKLV 360 NPMIRKSINDPWREVSWEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYLVQKLV Sbjct: 301 NPMIRKSINDPWREVSWEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYLVQKLV 360 Query: 361 RAAFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQTFESVMHSDVILIMGANPASGHPVF 420 RAAFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQTFESVM SDVILIMGANPA+GHPVF Sbjct: 361 RAAFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQTFESVMKSDVILIMGANPAAGHPVF 420 Query: 421 ASQIKRRVRQGAKLIVIDPRTTEMVKSPHIQADYHLKLRPGTNTAIITALAHVILSEGLQ 480 ASQIKRRVRQGAKLIVIDPRTTEMVKSPHIQADYHLKLRPGTNTAIITALAHVILSEGLQ Sbjct: 421 ASQIKRRVRQGAKLIVIDPRTTEMVKSPHIQADYHLKLRPGTNTAIITALAHVILSEGLQ 480 Query: 481 DEAYIQERCDLQSYQDWKAFVLRADNSPEAMAAITGVPAETIRGAARLYATGGNAAIYYG 540 DEAYIQERCDLQSYQDWK FVLR DNSPEAMAAITGVPAE IRGAARLYATGGNAAIYYG Sbjct: 481 DEAYIQERCDLQSYQDWKEFVLREDNSPEAMAAITGVPAEIIRGAARLYATGGNAAIYYG 540 Query: 541 LGVTEHAQGSTTVMGIANLAMCTGNVGREGVGVNPLRGQNNVQGSCDMGSFPHELPGYRH 600 LGVTEHAQGSTTVMGIANLAMCTGNVGREGVGVNPLRGQNNVQGSCDMGSFPHELPGYRH Sbjct: 541 LGVTEHAQGSTTVMGIANLAMCTGNVGREGVGVNPLRGQNNVQGSCDMGSFPHELPGYRH 600 Query: 601 ISDATVRGQFEQAWGVTLNPEPGLRIPNMFDAALDGSFKGLYCEGEDIVQSDPNTQHVAA 660 ISD+TVR QFEQAWGVTLNPEPGLRIPNMFDAALDGSFKGLYCEGEDIVQSDPNTQHVAA Sbjct: 601 ISDSTVRNQFEQAWGVTLNPEPGLRIPNMFDAALDGSFKGLYCEGEDIVQSDPNTQHVAA 660 Query: 661 ALQAMECIVVQDLFLNETAKYAHVFLPGSSFLEKDGTFTNAERRISRVRKVMPAKAGKSD 720 ALQAMECIVVQDLFLNETAKYAHVFLPGSSFLEKDGTFTNAERRISRVRKVMP KAGKSD Sbjct: 661 ALQAMECIVVQDLFLNETAKYAHVFLPGSSFLEKDGTFTNAERRISRVRKVMPPKAGKSD 720 Query: 721 WEVTVALAEALGYPMPYNHPSDIMDEIAALTPSFHGVSYDKLEKLGSIQWPCNEAAPEGT 780 WEVTVALAEALGYPMPYNHPS+IMDEIAALTPSFHGVSYDKLEKLGSIQWPCNE+APEGT Sbjct: 721 WEVTVALAEALGYPMPYNHPSEIMDEIAALTPSFHGVSYDKLEKLGSIQWPCNESAPEGT 780 Query: 781 PIMHVGSFIRGKGKFINTQYFATDEKVTQRYPLILTTGRILSQYNVGAQTRRTENSQWHS 840 PIMHVGSFIRGKGKFINTQYFATDEKVTQRYPLILTTGRILSQYNVGAQTRRTENSQWHS Sbjct: 781 PIMHVGSFIRGKGKFINTQYFATDEKVTQRYPLILTTGRILSQYNVGAQTRRTENSQWHS 840 Query: 841 EDRLEIHPHDAEDRGIREGDWVGVESRAGQTVLRATVTENVQPGVVYTTFHFPESGANVI 900 EDRLEIHPHDAEDRGIREGDWVGVESRAGQTVLRATVTE VQPGVVYTTFHFPESGANVI Sbjct: 841 EDRLEIHPHDAEDRGIREGDWVGVESRAGQTVLRATVTEKVQPGVVYTTFHFPESGANVI 900 Query: 901 TTDNSDWATNCPEYKVTAVQVMPVTQPSEWQQHYERFNREQLELLKGDKQGDKQIDKQAE 960 TTDNSDWATNCPEYKVTAVQVMPVTQPS+WQQHY+RFNREQL+LLKG QAE Sbjct: 901 TTDNSDWATNCPEYKVTAVQVMPVTQPSQWQQHYQRFNREQLDLLKG--------QAQAE 952 Query: 961 PLVTK 965 PLVTK Sbjct: 953 PLVTK 957 >gi|300312208|ref|YP_003776300.1| assimilatory nitrate reductase large subunit [Herbaspirillum seropedicae SmR1] Length = 922 Score = 290 bits (743), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 205/722 (28%), Positives = 334/722 (46%), Gaps = 45/722 (6%) Query: 237 LGQAEHSKVTTCAYCGVGCSFKAEMKGNEVVRMVPYKDGKANQGHSCVKGRFAWGYATHK 296 L A + TTC YCGVGC A MK + + + AN G CVKG A G Sbjct: 8 LALAVATTSTTCPYCGVGCGVSASMKDDGRIGIQGDAQHPANFGRLCVKGS-ALGETVDL 66 Query: 297 D-RILNPMIRKSINDPWREVSWEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYL 355 D R+L+P +R + ++++W++AL + AS+F I A+HG D++ S + E+ Y+ Sbjct: 67 DGRLLHPQLRDA-QGQLQQLAWDQALDHVASKFSAIIAEHGPDAVALYVSGQLLTEDYYI 125 Query: 356 VQKLVRAAFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQTFESVMHSDVILIMGANPAS 415 KL++ G+ N+DT +R+C S G K+ GE +E + +D+++++G+N A Sbjct: 126 ANKLMKGYIGSANIDTNSRLCMSSAVAGHKRAFGEDLVPVCYEDLELADLVVLVGSNAAW 185 Query: 416 GHPVFASQIKR--RVRQGAKLIVIDPRTTEMVKSPHIQADYHLKLRPGTNTAIITALAHV 473 HP+ +I R R +L+VIDPR T + AD HL ++PGT+ + L Sbjct: 186 CHPILFQRIARLKETRPALRLVVIDPRRTATCE----LADLHLPIKPGTDVWLFNGLMSY 241 Query: 474 ILSEGLQDEAYIQERCDLQSYQDWKAFVLRADNSPEAMAAITGVPAETIRGAARLYATGG 533 + GL+D A+I+ + + + A P +A + + + + +A Sbjct: 242 LAHRGLRDNAFIEAHT--KGFDEALAVADADCADPATVARLCKIDLKDLLAFYEAFANTE 299 Query: 534 NAAIYYGLGVTEHAQGSTTVMGIANLAMCTGNVGREGVGVNPLRGQNNVQGSCDMGSFPH 593 + +GV + + G+ V I N + TG +G+ G+G + GQ N G ++G + Sbjct: 300 KVVTGFSMGVNQSSAGTDKVNSIINCHLATGRIGKPGMGPFSITGQPNAMGGREVGGLAN 359 Query: 594 ELPGYRHISDATVRGQFEQAW-GVTLNPEPGLRIPNMFDAALDGSFKGLYCEGEDIVQSD 652 L + + R + W + +PGL+ +MF A +G K ++ + + S Sbjct: 360 MLAAHMDLDQPLHRQIVQDFWQSPRIADKPGLKAVDMFRAIEEGRIKAVWIMATNPMVSL 419 Query: 653 PNTQHVAAALQAMECIVVQDLFLN-ETAKYAHVFLPGSSFLEKDGTFTNAERRISRVRKV 711 P+ V ALQ E +V D+ +T AHV LP ++ EKDGT TN+ERRISR R Sbjct: 420 PDADLVQRALQKCELVVSSDVITQTDTNALAHVLLPALAWGEKDGTVTNSERRISRQRAF 479 Query: 712 MPAKA-GKSDWEVTVALAEALGYP-MPYNHPSDIMDEIAALT------------------ 751 + A + DW + +A +G+ + P +I DE A L+ Sbjct: 480 LSAPGEARGDWRIICDVARRMGFDGFDFAGPHEIFDEHARLSAHRNGEADASRVRRVFNL 539 Query: 752 PSFHGVSYDKLEKLGSIQWPC---NEAAPEGTPIM---HVGSFIRGKGKFINTQYFATDE 805 G+ + L IQWP ++ + GT + H S G+ +F+ T + Sbjct: 540 AGLTGMDRAAYDALAPIQWPVQRLSDGSVSGTARVLEDHRFSHADGRARFVPTAPRSAAH 599 Query: 806 KVTQRYPLILTTGRILSQYNVGAQTRRTENSQWH-SEDRLEIHPHDAEDRGIREGDWVGV 864 + YPLIL TGR+ ++ +T R+ H E ++IHP DA G+REG + Sbjct: 600 AACEDYPLILNTGRVRDHWHTMTRTGRSATLASHIPESFIDIHPQDALLYGVREGGLARI 659 Query: 865 ESRAGQTVLRATVTENVQPGVVYTTFHFPESGAN-----VITTDNSDWATNCPEYKVTAV 919 SR G V R + G V+ H+ A+ + D + PE+K T V Sbjct: 660 SSRWGAMVARVQHGGGIARGSVFVPIHWNGQSASDARVGAVVNPVVDPVSGEPEFKHTPV 719 Query: 920 QV 921 + Sbjct: 720 AI 721 >gi|300311101|ref|YP_003775193.1| NADH dehydrogenase I subunit G [Herbaspirillum seropedicae SmR1] Length = 772 Score = 205 bits (522), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/421 (31%), Positives = 217/421 (51%), Gaps = 19/421 (4%) Query: 19 MVTLEIDGVQVTVPAGTSVMRASVEAGINVPKLCATDSLEPFGSCRLCLVEIEKDGRRMK 78 MV +EIDG +V V G+ VM A+ + G +P C L +CR+CLVE+EK + + Sbjct: 1 MVEIEIDGKKVEVQEGSMVMDAANKLGTYIPHFCYHKKLSIAANCRMCLVEVEKAPKPL- 59 Query: 79 GYPASCTTPCEPGMKVQTQTPKLAEIRRGVMELYISDHPLDCLTCPTNGNCELQDMAGVV 138 PA C TP GM V+T + K + ++GVME + +HPLDC C G C+LQD+A V Sbjct: 60 --PA-CATPVNAGMIVRTASDKAVKAQKGVMEFLLINHPLDCPICDQGGECQLQDLA--V 114 Query: 139 GLREVRYGYEGENHTKMKKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTINGRGFE 198 G Y+ E KD + ++CI C RCVR +E G L + GRG Sbjct: 115 GYGGSSSRYQEEKRVVEPKDVGPLISMKEMNRCIHCTRCVRFGQEVAGVMELGMLGRGEH 174 Query: 199 SRVSAGQMDTFMESECVSCGACVEACPTATLTEKTVIMLGQA-EHSKVTTCA-YCGVGCS 256 S ++ T ++SE G ++ CP LT K + E S+ + + + VG + Sbjct: 175 SEITTFVGKT-VDSEL--SGNMIDLCPVGALTSKPFRYSARTWELSRRKSVSPHDSVGAN 231 Query: 257 FKAEMKGNEVVRMVPYKDGKANQGHSCVKGRFAWGYATHKDRILNPMIRKSINDPWREVS 316 ++K +V+R++P+++ + N+ K RFA+ + R+ PM+++ + W+EV Sbjct: 232 LIVQVKNGKVMRVLPFENEEVNECWISDKDRFAYEALDSEQRLTKPMLKQ--DGKWQEVD 289 Query: 317 WEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYLVQKLVRAAFGNNNVDTCARVC 376 W+ AL Y A R I+ +HG D+I + + T EE L+QK+VR G+ N+D R Sbjct: 290 WQTALEYVAHGLRNIRHEHGADAIAALGTPYSTLEELSLLQKIVR-GVGSENIDFRLR-- 346 Query: 377 HSPTGYGLKQTLGESAGTQTFESVMHSDVILIMGANPASGHPVFASQIKRRVRQGAKLIV 436 + +GL + G E + + ++G+ HP+ ++++++ + GAK+ V Sbjct: 347 --QSDFGLDGQIKPWLGMSIVE-FSQLNRVFVIGSFLRKDHPLLSARLRQSAKSGAKVSV 403 Query: 437 I 437 + Sbjct: 404 L 404 >gi|300311015|ref|YP_003775107.1| anaerobic (selenocysteine-containing) formate dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 775 Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/396 (26%), Positives = 173/396 (43%), Gaps = 40/396 (10%) Query: 298 RILNPMIRKSINDPWREVSWEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYLVQ 357 R+ +PM+ + D ++++ W +A + A + + A D S R +NE +L Q Sbjct: 111 RLTHPMVYDAATDKYKKIEWADAFALMA---KHLNALPDPDMADFYVSGRASNEAAFLFQ 167 Query: 358 KLVRAAFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQTFESVMHSDVILIMGANPASGH 417 VR +G NN C+ +CH PT GL T+G GT E H D +L+ G NPA+ H Sbjct: 168 LFVRQ-YGTNNFPDCSNMCHEPTSVGLPGTVGIGKGTVLLEDFDHCDTLLLFGQNPATNH 226 Query: 418 PVFASQIKRRVRQGAKLIVIDP------------------------RTTEMVKSPHIQAD 453 P +++ ++GA ++ I+P R + M P + D Sbjct: 227 PRMMGELRHASKRGATIVAINPLKERGLERFADPQSKVEMLTMGSTRISSMFIHPTLGGD 286 Query: 454 YHLKLRPGTNTAIITALAHVILSEGLQDEAYIQERCDLQSYQDWKAFVLRADNSPEAMAA 513 L T + A +E + D +I+E ++++ A RA+ S + + A Sbjct: 287 LALIKGVIKRTIELDDAARAAGAERVIDVKFIEEHT--AGFEEFAAQA-RAE-SWDDIVA 342 Query: 514 ITGVPAETIRGAARLYATGGNAAIYYGLGVTEHAQGSTTVMGIANLAMCTGNVGREGVGV 573 +GV E I A++Y G +G+G+T+H T+ ++N+ M GN+GR+G G+ Sbjct: 343 ESGVSREDIEKLAQVYVKGKAVIATWGMGLTQHKHAVATIQLLSNMMMLRGNIGRQGAGL 402 Query: 574 NPLRGQNNVQGSCDMGSFPHELPGYRHISDATVRGQFEQAWGVTLNPEPGLRIPNMFDAA 633 P+RG +NVQG +G P + + EQ +G G A Sbjct: 403 CPVRGHSNVQGDRTVGIDEKPTPAF--------LDRLEQVFGFKAPRHHGNDTVGSVMAM 454 Query: 634 LDGSFKGLYCEGEDIVQSDPNTQHVAAALQAMECIV 669 L+G K G + + P+T A+++ V Sbjct: 455 LEGRTKVFIGLGGNFAMATPDTPRTFEAMRSCNLTV 490 >gi|300310774|ref|YP_003774866.1| anaerobic formate dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 790 Score = 126 bits (317), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 170/691 (24%), Positives = 271/691 (39%), Gaps = 94/691 (13%) Query: 298 RILNPMIRKSINDPWREVSWEEALSYAASEFRRIQAKHGKDSIGGITSSRCTNEETYLVQ 357 R+ PM + +D + VSW EA A++ R + K + S R + E +YL Q Sbjct: 132 RVTEPMKYDAASDRYLPVSWSEAFDDIAAQLRAMDPK----KVVFYASGRASLETSYLYQ 187 Query: 358 KLVRAAFGNNNVDTCARVCHSPTGYGLKQTLGESAGTQTFESVMHSDVILIMGANPASGH 417 + R +G NN+ + +CH T L QT+G GT T + +D IL G N + Sbjct: 188 LMARM-YGTNNLPDSSNMCHESTSVALPQTIGVPVGTVTLDDFGQTDCILFFGHNTGTNA 246 Query: 418 PVFASQIKRRVRQGAKLIVIDP-------------RTTEMVKSPHIQ-ADYHLKLRPGTN 463 P ++ ++G +I +P EMV H + +L+++ G + Sbjct: 247 PRMLHPLEEVRKRGVPVITFNPLRERGLERFVNPQSPKEMVTPAHTDISTQYLQIKIGGD 306 Query: 464 TAIITALAHVIL-------SEGLQ---DEAYIQERCD-LQSYQDWKAFVLRADNSPEAMA 512 +A +A IL EGL D A+I+E + + D +RA E + Sbjct: 307 SAAAIGMAKRILERDDKARQEGLPRLLDLAFIEEHTSGFEQFAD----AVRAAPWDE-LE 361 Query: 513 AITGVPAETIRGAARLYATGGNAAIYYGLGVTEHAQGSTTVMGIANLAMCTGNVGREGVG 572 GV + AA YA G A + YG+GVT+H + T+ + NL + GN+G+ G G Sbjct: 362 RHAGVSRAELELAADTYAGAGRAMLMYGMGVTQHREAVRTIHMLTNLLLMRGNIGKPGAG 421 Query: 573 VNPLRGQNNVQGSCDMGSFPHELPGYRHISDATVRGQFEQAWGVTLNPEPGLRIPNMFDA 632 + P+RG +NVQG +G E P FE E GL + Sbjct: 422 ICPIRGHSNVQGQRTVGI--TEKPELVPNDKLRALYHFEPPM------EKGLNTVEACEK 473 Query: 633 ALDGSFKGLYCEGEDIVQSDPNTQHVAAALQAMECIVVQDLFLNET----AKYAHVFLPG 688 DG + G + V++ P+ + AA + + V N + + ++V LP Sbjct: 474 IRDGELSAFFMLGGNFVRAIPDHGVMEAAWRKLPLTVQVVTHFNRSCVIHGQTSYV-LPC 532 Query: 689 SSFLEKDGTFTNAERRI-----------SRVRKVMPAKAGKSDWEVTVALAEALGYPMPY 737 +E D E+ + SR R + S+ + LA+ L +P+ Sbjct: 533 LGRIEIDRQ-RGGEQAVSVEDSTGCMHGSRGRAEPASPHLLSEPAIVAELAKRL---LPF 588 Query: 738 NHPSD----------IMDEIAALTPSFHGVSYDKLEKLGSIQWPCNEAAPE---GTPIMH 784 N D I D I A P ++ G P AA E TP Sbjct: 589 NPQVDWDGWVGDYARIRDAIEATYPDIFRDFNARMWNPGGFARPL--AARERQWKTP--- 643 Query: 785 VGSFIRGKGKFINTQYFATDEKVTQRYP--LILTTGRILSQYNVGAQTRRTE-NSQWHSE 841 G+ F+ F D + P L L T R SQ+N + W + Sbjct: 644 -----NGRANFMTPDGFDPDPDMPGDAPEVLRLMTTRGDSQFNTTVYSLDDRFRGVWGTR 698 Query: 842 DRLEIHPHDAEDRGIREGDWVGVESRAGQTVLRATVTENVQP---GVVYTTFHFPESGAN 898 L ++ D + G+ GD+V E+ + V R V+P V +FPE Sbjct: 699 RVLLMNLRDLQQHGLAAGDFVCAETVSADGVERRVPHLRVEPFDIPVGCVMGYFPELN-R 757 Query: 899 VITTDNSDWATNCPEYKVTAVQVMP-VTQPS 928 +I + + P K ++++P + +PS Sbjct: 758 LIPLFHHARGSKVPAAKSVPIRLIPELREPS 788 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.132 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 3,005,904 Number of extensions: 126507 Number of successful extensions: 329 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 308 Number of HSP's successfully gapped: 6 Length of query: 965 Length of database: 1,619,870 Length adjustment: 94 Effective length of query: 871 Effective length of database: 1,174,780 Effective search space: 1023233380 Effective search space used: 1023233380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)