BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1317.p
         (548 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310805|ref|YP_003774897.1| major facilitator superfamily p...  1039   0.0  

>gi|300310805|ref|YP_003774897.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 580

 Score = 1039 bits (2686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/548 (97%), Positives = 542/548 (98%)

Query: 1   MAFDFLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGA 60
           MAFDFLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGA
Sbjct: 33  MAFDFLNKEHTVAKPGFNRWLVPPAALAIHLCIGMAYGFSVFWLPLSKALGVTAPIACGA 92

Query: 61  DVGFFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCG 120
           DVGFFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCG
Sbjct: 93  DVGFFAQVFSSSCDWKISMLGWMYTMFFVLLGISAALWGGWLEHAGPRKAGVVAAICWCG 152

Query: 121 GLLISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFG 180
           GLLISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFG
Sbjct: 153 GLLISALGVKTHQIWLMWLGSGVIGGVGLGLGYISPVSTLIKWFPDRRGMATGMAIMGFG 212

Query: 181 GGALVGTPLADALMKKFASPTSVGVWETFVVMAIIYFVFMMAGAFGYRVPPTGWKPAGWT 240
           GGALVGTPLADA MKKFA+PTSVGVWETFVVMA+IYFVFMMAGAFGYRVPPTGWKPAGWT
Sbjct: 213 GGALVGTPLADAAMKKFATPTSVGVWETFVVMAVIYFVFMMAGAFGYRVPPTGWKPAGWT 272

Query: 241 PPVAKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKL 300
           PPVAKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKL
Sbjct: 273 PPVAKSSATMITQNHVHVSKVWGIPQFWLVWLVLCLNVSAGIGVIGIASPMLQEVFGGKL 332

Query: 301 LGVNIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLG 360
           LGVNIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLG
Sbjct: 333 LGVNIGFNDLSVEQKTAIAALAAGFTGLISLFNIGGRFAWASCSDFFGRKMTYAIFFVLG 392

Query: 361 FVLYVSLPWSAKAGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTA 420
           FVLYVSLPWSAKAGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTA
Sbjct: 393 FVLYVSLPWSAKAGNIPLFVGAVCIILSMYGGGFATVPAYLADLFGTQMVGAIHGRLLTA 452

Query: 421 WATAGILGPVVVNYMREYQLSLGMPKSQVYNTTMYILAGMLVLGLICNLLIRPVAAKHFM 480
           WATAGILGPVVVNYMREYQL+ GMPK++VYNTTMYILAGML+LGLICNLLIRPVAAKHFM
Sbjct: 453 WATAGILGPVVVNYMREYQLAQGMPKNEVYNTTMYILAGMLILGLICNLLIRPVAAKHFM 512

Query: 481 TPEELAREKQLAHEKSAADAVATAGSGDMSQIGTGGNPVMIGLAWAAVGIPLIWGITLVL 540
           TPEELA EK+LAHEKSAADA  TAGSGDMSQIG+GGNPV IGLAWAAVGIPLIWGITLVL
Sbjct: 513 TPEELAHEKKLAHEKSAADAAVTAGSGDMSQIGSGGNPVFIGLAWAAVGIPLIWGITLVL 572

Query: 541 QKSAVLFR 548
           QKSAVLFR
Sbjct: 573 QKSAVLFR 580


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.141    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,902,421
Number of extensions: 86390
Number of successful extensions: 438
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 458
Effective length of database: 1,193,720
Effective search space: 546723760
Effective search space used: 546723760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 133 (55.8 bits)