BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1316.p
         (355 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310804|ref|YP_003774896.1| molybdate metabolism LysR famil...   694   0.0  

>gi|300310804|ref|YP_003774896.1| molybdate metabolism LysR family
           transcription regulator [Herbaspirillum seropedicae
           SmR1]
          Length = 355

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/355 (94%), Positives = 345/355 (97%)

Query: 1   MFKVHIKPHWEIAYDNEAALDTANLLTLLTAIQQSGSIARAAQLTRYSYRHAWGLLRDAE 60
           M+KVHIKPHWEIAYDNEA LDTANLL LLTAIQQSGSIARAAQLTRYSYRHAWGLLR+AE
Sbjct: 1   MYKVHIKPHWEIAYDNEAPLDTANLLMLLTAIQQSGSIARAAQLTRYSYRHAWGLLREAE 60

Query: 61  RMFGNALIESGRGRGTTLTDFASKLLWADRLVTARLSPTLDSLASELEVELSKTVEGKAE 120
           R+FGNALIESGRGRGTTLTDFASKLLWADRLVTARLSPTLDSLASELEVEL KTVEGKAE
Sbjct: 61  RLFGNALIESGRGRGTTLTDFASKLLWADRLVTARLSPTLDSLASELEVELGKTVEGKAE 120

Query: 121 KVRLNASHGFAVAALLNKINEGRLPVEVRYRHSTDAVAALSRQECDLAGFHVPLGEFEKP 180
           KVRLNASHGFAVAALL KINE RLPVEVRYRHSTDAVAALSRQECDLAGFHVPLGEFEKP
Sbjct: 121 KVRLNASHGFAVAALLGKINEARLPVEVRYRHSTDAVAALSRQECDLAGFHVPLGEFEKP 180

Query: 181 AIAAYAKWLNKRSDCLIHLAIRNQGLFIEPDNPKGLRGLADLVRTDLRFVNREAGSGTRM 240
           AI+ YAKWLNKRSDCLIHLAIRNQGLF+EPDNPKG+R L DL+RTDLRFVNREAGSGTRM
Sbjct: 181 AISTYAKWLNKRSDCLIHLAIRNQGLFVEPDNPKGVRNLTDLIRTDLRFVNREAGSGTRM 240

Query: 241 LLELMLAGAGIAHKKINGFENTEFTHSAVAAFIASGMADVGFGVQTAAHRFGLGFIPLVR 300
           LLELMLAGAGI HKKINGFENTEFTHSAVAAFIASGMADVGFGVQTAAHRFGLGFIPLVR
Sbjct: 241 LLELMLAGAGIPHKKINGFENTEFTHSAVAAFIASGMADVGFGVQTAAHRFGLGFIPLVR 300

Query: 301 ERYFFALPAASLQDPLIRSVIDILQSDSFRKVVNNLAGYDATDMGKIQTIKEAFG 355
           ERYFFALPAASL DPLIR+VIDILQSDSFRKVVNNLAGYDAT+MGKIQTIKEAFG
Sbjct: 301 ERYFFALPAASLHDPLIRAVIDILQSDSFRKVVNNLAGYDATEMGKIQTIKEAFG 355


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,058,078
Number of extensions: 43860
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,212,660
Effective search space: 326205540
Effective search space used: 326205540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)