BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1313.p
         (312 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310801|ref|YP_003774893.1| aldose 1-epimerase [Herbaspiril...   597   e-172

>gi|300310801|ref|YP_003774893.1| aldose 1-epimerase [Herbaspirillum
           seropedicae SmR1]
          Length = 312

 Score =  597 bits (1538), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/312 (92%), Positives = 305/312 (97%)

Query: 1   MSIIEEQEVPPDLPHIQRIEVNQLQCLRVQTERAELLIAEQGAQVLRYQVHGQEPLIWMS 60
           MS+I+EQEVPPDLPHIQRIEVNQLQCLRVQT RAELLIAEQGAQVLRYQ HGQEPLIWMS
Sbjct: 1   MSLIDEQEVPPDLPHIQRIEVNQLQCLRVQTARAELLIAEQGAQVLRYQEHGQEPLIWMS 60

Query: 61  EQAAFEAGNSVRGGIPVCWPWFGDLMRNPPQVQSLHAGGRLPAHGLVRGIPWLLMENAIE 120
           E+AAFEAGNSVRGGIPVCWPWFGDLMRNPPQVQSLH+GGRLPAHGLVRGIPWLLMENAIE
Sbjct: 61  EEAAFEAGNSVRGGIPVCWPWFGDLMRNPPQVQSLHSGGRLPAHGLVRGIPWLLMENAIE 120

Query: 121 GDTVRLVLAIPPTTESPALRHLPPGIELRLEILLDERLHLKLTTRNGSEQHIALTQALHS 180
           GD+VRLVLAIPPT+ESPALRHLPPGIELRLEILLD+RLHLKLTTRNGSEQH+ALTQALHS
Sbjct: 121 GDSVRLVLAIPPTSESPALRHLPPGIELRLEILLDDRLHLKLTTRNGSEQHLALTQALHS 180

Query: 181 YFAVSSIHDVTVEGLEGQRYIETLEGWAEREQKRALVVSSETDRIYLDLPPHLSIRDDGW 240
           YFAVSSIHDVT+EGLEG RYIETLEGWAEREQKRALVVSSETDRIYLDLPP LSIRDDGW
Sbjct: 181 YFAVSSIHDVTIEGLEGHRYIETLEGWAEREQKRALVVSSETDRIYLDLPPRLSIRDDGW 240

Query: 241 NRRIHIQASGSTSAVVWNPWVSKARRLSQFADDAWQRMLCIETANVMDDLVELEPGAEHS 300
           NRRI I+ASGSTSAVVWNPWVSKARRLSQFADDAWQRMLC+ETANVM+DLVELEPGAEH+
Sbjct: 241 NRRIQIEASGSTSAVVWNPWVSKARRLSQFADDAWQRMLCVETANVMEDLVELEPGAEHT 300

Query: 301 MGVSLWAEALGG 312
           +GV+LW+E  GG
Sbjct: 301 LGVTLWSEKAGG 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 987,547
Number of extensions: 39002
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,217,395
Effective search space: 276348665
Effective search space used: 276348665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)