BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1308.p
         (93 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310793|ref|YP_003774885.1| hypothetical protein Hsero_1461...   134   2e-33

>gi|300310793|ref|YP_003774885.1| hypothetical protein Hsero_1461
          [Herbaspirillum seropedicae SmR1]
          Length = 122

 Score =  134 bits (336), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 59/78 (75%), Positives = 69/78 (88%)

Query: 15 GCSQPEGTWQATQDVTVFKAADEADEPAFLLRQGETCALGREQIVKAFMYREVSCPQGKG 74
          GCS+PEG W ATQDV VF+AADEADE AF++R+GETCALGREQIVKAFMYRE +C QGKG
Sbjct: 17 GCSKPEGKWHATQDVPVFRAADEADEVAFVVRKGETCALGREQIVKAFMYREAACAQGKG 76

Query: 75 WIIYEAGYPFVRKNPPPS 92
          WI+YEAGYPF +++P  S
Sbjct: 77 WILYEAGYPFTQEHPAAS 94


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 285,379
Number of extensions: 9695
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 1
Length of query: 93
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 30
Effective length of database: 1,321,565
Effective search space: 39646950
Effective search space used: 39646950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)