BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1306.p
         (265 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310791|ref|YP_003774883.1| solute binding periplasmic prot...   462   e-131

>gi|300310791|ref|YP_003774883.1| solute binding periplasmic protein
           [Herbaspirillum seropedicae SmR1]
          Length = 262

 Score =  462 bits (1190), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/253 (90%), Positives = 239/253 (94%)

Query: 13  FQRSVLALALGAVSTLAAAADIHVVSSGGFAAAYKALAPVFEKKTGHKLISGWGPSMGQT 72
            QRSVLAL +GA S LAAA DIHVVSSGGFAAAYK LAP FEKKTGHKLISGWGPSMG+T
Sbjct: 10  LQRSVLALLIGATSALAAATDIHVVSSGGFAAAYKTLAPEFEKKTGHKLISGWGPSMGET 69

Query: 73  PQAIPNRLQRGEHIDVVIMVGDSLDKLVAEGKVSKSEHKLLALSRIGLAVKAGAPKPDIS 132
           PQAIPNRLQRGEHIDVVIMVGDSLDKLVA GKVSK+EHKLLALSRIGLAVKAGAP+PDIS
Sbjct: 70  PQAIPNRLQRGEHIDVVIMVGDSLDKLVAAGKVSKTEHKLLALSRIGLAVKAGAPRPDIS 129

Query: 133 TLDAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYKARMIPAEPVGQVVARGE 192
            LDAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYK RMIPAEPVGQVVARG+
Sbjct: 130 NLDAFKRTLLTAHSVVYSDSASGVFLSTKLFKRLGIDQQMAYKGRMIPAEPVGQVVARGD 189

Query: 193 AEVGLQQISELKPVKGIDIIGPIPESAQQLTPFSAGVVVGTHEPQAAKELLDFLASPEAE 252
           AE+GLQQISELKPVKGIDIIGPIPE AQQLTPFSAGVVVG HE +AAKEL+ FLASPEA+
Sbjct: 190 AEIGLQQISELKPVKGIDIIGPIPEEAQQLTPFSAGVVVGAHEAEAAKELVHFLASPEAQ 249

Query: 253 AAIKASGLDPAPR 265
           AAIKASGLDPAPR
Sbjct: 250 AAIKASGLDPAPR 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 762,263
Number of extensions: 31795
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 181
Effective length of database: 1,222,130
Effective search space: 221205530
Effective search space used: 221205530
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)