BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1304.p (553 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 441 e-125 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 427 e-120 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 426 e-120 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 417 e-118 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 416 e-117 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 441 bits (1134), Expect = e-125, Method: Compositional matrix adjust. Identities = 274/511 (53%), Positives = 359/511 (70%) Query: 2 IANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRI 61 + ++K+ RL + F +++ ++ IT + + SLS++ + + IVEDRY ++ LA ++ + Sbjct: 3 LKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRDNV 62 Query: 62 SENASAMRNLLLLDDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQALR 121 + A +RN LL + ++ T + A A E L +++ LS+ +GR+ F IQ R Sbjct: 63 NGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQEAR 122 Query: 122 AAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQAA 181 +AY + + +L +A +LL + QD+Y L ++A +ME+S + Sbjct: 123 SAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTEGR 182 Query: 182 DQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQAGAR 241 D +ML ++ +A+A+ AW TRS+TRP+ AV VA VA G+L QI A ++ Sbjct: 183 DTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGATSK 242 Query: 242 DEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLEETA 301 DE G LL AL+ MN SL RIV +VR G++TI AS+EIA GNLDLSSRTE+QAG+LEETA Sbjct: 243 DETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEETA 302 Query: 302 AAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVDIIG 361 +AMEELTSTV+QNADNA+QA+ LAA AS VA + G VV QVV TM I+ ASR+IVDII Sbjct: 303 SAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDIIS 362 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDDSVA 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIKALIDDSV+ Sbjct: 363 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDSVS 422 Query: 422 QVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDETTQQ 481 +VD G RLVEQAG+TM EVV SV RV+ +V EIS A+ +Q GIEQ+N AIT MD+ TQQ Sbjct: 423 RVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVTQQ 482 Query: 482 NAALVEQAAAAAQSLQDQSQRLRELVGVFRL 512 NAALVE+AAAAAQSLQ+QS RL V VF+L Sbjct: 483 NAALVEEAAAAAQSLQEQSTRLSATVSVFKL 513 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust. Identities = 261/518 (50%), Positives = 343/518 (66%) Query: 2 IANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRI 61 + NLK+G RL +GF +L L+A + AL + L ++ T + + A I Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 62 SENASAMRNLLLLDDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQALR 121 EN ++ DD I A I + ++A ++ + ++ F E+ LR Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 122 AAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQAA 181 AAY+ +Q + + G A ++ +L + D Y + Y Q+++++ Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 182 DQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQAGAR 241 Y ++LA+ + + +G AW TRS+TRP+ AV +A+ VA G+L +I + +R Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 242 DEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLEETA 301 DE G+LL AL+ MNG+L IV VR G ETI AS EIA GNLDLS+RTE QAGSLEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 302 AAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVDIIG 361 +AME+LTSTV+QNADNA+QA+ LAA AS VA + G VV QVV+TM I A+S++I DIIG Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDDSVA 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA+AAKEIK LIDDSV Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 422 QVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDETTQQ 481 +VD G RLV +AG TMQEVV SV RV+ +V EI++A+Q+Q GIEQVN AITH+DETTQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 482 NAALVEQAAAAAQSLQDQSQRLRELVGVFRLQQEPPLV 519 NAALVEQAAAAA+S+QDQ+ L + V VFRL+ + ++ Sbjct: 481 NAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDAQVL 518 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 426 bits (1096), Expect = e-120, Method: Compositional matrix adjust. Identities = 261/533 (48%), Positives = 357/533 (66%), Gaps = 17/533 (3%) Query: 4 NLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRISE 63 NL + RL + F +++ ++AGI AL +A L+ +++ +V DRY ++ + N + ++ + Sbjct: 5 NLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISGKVDD 64 Query: 64 NASAMRNLLLLDDHQQLTEE---VALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQAL 120 A ++RN LL+ D Q+ E + ++ + ++L+RL +++ + + ++ Sbjct: 65 VAISLRNQLLMTDPAQIAAEQKTIESLSAENTKLYDELTRL---VANPEAKAKLDKVTET 121 Query: 121 RAAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQA 180 R +Y +++ +L S+G A +L+L + Q Y ++L ++M++S QA Sbjct: 122 RKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQSVDQA 181 Query: 181 ADQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQAGA 240 Y +IM+ +LA AW +RS+TRP+ AVEVA+ VA G+L I A + Sbjct: 182 EAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAVIAAHS 241 Query: 241 RDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLEET 300 DE G+LL+AL MN L IV +VR G +++ AS++IA GNLDLSSRTE+QA +LEET Sbjct: 242 NDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQASALEET 301 Query: 301 AAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVDII 360 A+++EELTS+V+QNAD+ +++ LAA AS VA + G V+QVV TM I+ +S +IVDII Sbjct: 302 ASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHKIVDII 361 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDDSV 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSATAAKEIK LI+DSV Sbjct: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKELINDSV 421 Query: 421 AQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDETTQ 480 QV G LV QAGSTM VV S+ +VSHIVGEIS AT++Q GIEQVNQAI MD TTQ Sbjct: 422 NQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQMDNTTQ 481 Query: 481 QNAALVEQAAAAAQSLQDQSQRLRELVGVFRLQQEPPLVLFQTDEVSAAAVAP 533 QNAALVE+AAAAAQ+LQDQ+QRL +LVGVFRL DEV + AP Sbjct: 482 QNAALVEEAAAAAQALQDQAQRLLDLVGVFRL-----------DEVGGSGPAP 523 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 417 bits (1073), Expect = e-118, Method: Compositional matrix adjust. Identities = 263/522 (50%), Positives = 356/522 (68%), Gaps = 5/522 (0%) Query: 2 IANLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRI 61 I+++K+ RLG F ++ ++ I + + +L + T +IV DRY +V L + ++ Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 62 SENASAMRNLLLLDDHQQLTEEVALIAKGEAAIGEDLSRLQARLSSEQGRKSFAEIQALR 121 + A ++RN ++ + ++ + + + + + E L+ ++ R ++ +G + A ++ R Sbjct: 64 NTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQAR 123 Query: 122 AAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQAA 181 A Y + + + + L +A L QD+Y A +K ++ S +M++S ++A+ Sbjct: 124 ADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAERAS 183 Query: 182 DQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQAGAR 241 IML ++ +AV + A TRS+TRP+ AV+VA VA G+L QI+A ++ Sbjct: 184 AASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEATSK 243 Query: 242 DEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLEETA 301 DE G LL AL+ MN +L RIV +VR+G +TI AS EIA GNLDLSSRTEQQAG+LEETA Sbjct: 244 DETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEETA 303 Query: 302 AAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVDIIG 361 +AMEELTSTVRQNADNA+QA+ LA AS VA + G VV +VV TM I+ ASR+IVDII Sbjct: 304 SAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDIIS 363 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDDSVA 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK+LID SV Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDASVE 423 Query: 422 QVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDETTQQ 481 +V+ G RLV QAG+TM+EVV SV RV+ +V EI+ A+ +Q GIEQ+NQAI MDE TQQ Sbjct: 424 RVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVTQQ 483 Query: 482 NAALVEQAAAAAQSLQDQSQRLRELVGVFRL-----QQEPPL 518 NAALVEQAAAAAQSLQ+QS RL + VG+FRL Q PL Sbjct: 484 NAALVEQAAAAAQSLQEQSGRLSDTVGIFRLGNDHAHQPSPL 525 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 416 bits (1068), Expect = e-117, Method: Compositional matrix adjust. Identities = 249/514 (48%), Positives = 345/514 (67%), Gaps = 5/514 (0%) Query: 4 NLKLGARLGLGFGLVLTLLAGITALAIASLSTLHQGTRQIVEDRYPQVLLANDVLLRISE 63 NLK+ RL F ++ LLA ++ A ++ +++ QIV DRY +V A D+ ++E Sbjct: 7 NLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGVNE 66 Query: 64 NASAMRNLLLLDDHQQLTEEVALIAKGEAAIG---EDLSRLQARLSSEQGRKSFAEIQAL 120 +R + + +++ E+ A+ E A+ E L ++ AR + G+K + Sbjct: 67 QIKYLRGIAIDIENRPANEK--RFAQLEVAVKQTKEALDKITARQVTAVGQKKAKALDEA 124 Query: 121 RAAYQQGQQRFLQLASTGATMDAAQLLLGSLRQEQDRYIARLKSYIAVGSQMMERSGQQA 180 R A+ + FL L G + A + +L + Q+ Y+A +++ ++ G +A Sbjct: 125 RIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEGAKA 184 Query: 181 ADQYHQKTLIMLAMAMLAVAVGGCFAWWATRSVTRPVRHAVEVAQQVADGNLCHQIQAGA 240 + LA +M AV + RS+ +P+ AV VA+ VA G+L +I+ + Sbjct: 185 VADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIEPHS 244 Query: 241 RDEIGQLLEALRQMNGSLTRIVFDVRSGAETIAAASSEIAGGNLDLSSRTEQQAGSLEET 300 RDE GQL++ALR+MN +L IV VR G E+I AS EIA GNLDLS+RTEQQAGSLEET Sbjct: 245 RDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSLEET 304 Query: 301 AAAMEELTSTVRQNADNAQQADRLAAEASAVAARSGEVVQQVVSTMHGISAASRRIVDII 360 A+AMEE+TSTVRQNADNA+QA+++A AS +A + G++V +VV TM I+ +SR+IVDII Sbjct: 305 ASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDII 364 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSATAAKEIKALIDDSV 420 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA AAKEIKALI DSV Sbjct: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSV 424 Query: 421 AQVDIGGRLVEQAGSTMQEVVGSVGRVSHIVGEISMATQQQRTGIEQVNQAITHMDETTQ 480 +V+ G LV QAG+TM++VV SV V+ IV EIS A+ +Q +GIE++N+A+T MDE TQ Sbjct: 425 GKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQ 484 Query: 481 QNAALVEQAAAAAQSLQDQSQRLRELVGVFRLQQ 514 QNAALVEQAAAAA+S+Q+Q+ RL + + +F+L+Q Sbjct: 485 QNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQ 518 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.127 0.332 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,073,202 Number of extensions: 34436 Number of successful extensions: 527 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 301 Number of HSP's successfully gapped: 71 Length of query: 553 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 463 Effective length of database: 1,193,720 Effective search space: 552692360 Effective search space used: 552692360 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)