BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1302.p (315 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanill... 232 2e-62 gi|300309798|ref|YP_003773890.1| flavodoxin reductases (ferredox... 201 4e-53 gi|300310671|ref|YP_003774763.1| flavodoxin reductases (ferredox... 179 2e-46 >gi|300313278|ref|YP_003777370.1| vanillate O-demethylase (vanillate degradation ferredoxin-like) oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 318 Score = 232 bits (592), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/317 (44%), Positives = 185/317 (58%), Gaps = 9/317 (2%) Query: 6 LSVRVQAMRFEAQGVISVELGLPEEGELPPFEAGAHIDLHLGNGLVRSYSLSNSPTERHR 65 L V+V A R EA +I++EL + LP F AGAHID+HL GLVR YSL N+P E+HR Sbjct: 4 LQVKVAARREEAHDIIALELVAVDGAALPAFTAGAHIDVHLPGGLVRQYSLCNAPHEQHR 63 Query: 66 YVVGVLHDRSSRGGSRYVHEQLRVGATLSISAPRNHFPLEEAAPLSVLIAGGIGITPISC 125 Y +GVL D +SRGGS VHE L++G L+ISAPRN F L A S+L+AGGIG+TPI C Sbjct: 64 YQIGVLRDVNSRGGSVAVHEALKLGDILTISAPRNQFALVPAQH-SLLLAGGIGVTPILC 122 Query: 126 MYHHLRAQGKEVVLHYCARSRREAAFTRQLLGQPGVSS----HFDD-EAGCAPDLRAVLS 180 M L A G +HYCARS AF R+ + G ++ H+DD EA DL A+L+ Sbjct: 123 MAEALAAAGASFEMHYCARSPARQAF-RERIAASGFAARVVHHYDDGEAAQKLDLDALLA 181 Query: 181 AYPQQAHFYCCGPTPMLNAFESLCEELDLP--HVHIERFAADKLAALPSGSYVAELARSK 238 H Y CGP + P VH E F A + A +G++ +LA S Sbjct: 182 QADPATHLYVCGPAGFIAHVVDTARARGWPEAQVHFEYFGAAPVKADGNGAFEVKLASSG 241 Query: 239 ASVTVPAGKSLLDALLDAGIEVEHSCREGVCGACETKVLEGELEHRDGVLSKAERAAGKT 298 T+P ++++ L + G++V SC +G+CG C T+VLEGE +HRD L+ ERAA Sbjct: 242 QVYTIPPERTVIQVLCEHGVDVPVSCEQGICGTCLTRVLEGEPDHRDQYLTDEERAANDQ 301 Query: 299 MMVCVSGCKGARLVLDL 315 C S + A LVLDL Sbjct: 302 FTPCCSRARSALLVLDL 318 >gi|300309798|ref|YP_003773890.1| flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 201 bits (512), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 133/327 (40%), Positives = 183/327 (55%), Gaps = 20/327 (6%) Query: 6 LSVRVQAMRFEAQGVISVELGLPEEGELPPFEAGAHIDLHLGNGLVRSYSLSNSPTERHR 65 L +RV+A+R AQ + +EL + LPP+ GAH+ L L +GLVR+YSL N+P +R Sbjct: 16 LMLRVRAVRQAAQDIRLLELVSQDGAALPPWTPGAHLRLQLQDGLVRAYSLCNTPQQRDC 75 Query: 66 YVVGVLHDRSSRGGSRYVHEQLRVGATLSISAPRNHFPLEEAAPLSVLIAGGIGITPISC 125 Y++ V + SRGGS ++HEQ++ G T+S S P N FPL +L+A GIGITP+ Sbjct: 76 YLIAVKREPDSRGGSAFLHEQVQEGTTISASPPVNAFPLIADVRAPLLLAAGIGITPLHA 135 Query: 126 MYHHLRAQGKEVVLHYCARSRREAAFTRQL-LGQPGVSSHFD-DEAGCAPDLRAVLSAYP 183 M L QG+ LHY ARS AAF +L G G+S H D A + A L+A P Sbjct: 136 MAAELATQGRRHRLHYFARSLAHAAFFHELAAGSQGMSLHLGLDGAETEHAIAAALAAAP 195 Query: 184 QQAHFYCCGPTPMLNAFESLCE-----ELDLPHVHIERF----------AADKLAALPSG 228 + + Y CGP+P ++A + E D +H ERF + P Sbjct: 196 RSSPLYVCGPSPFIDAARRHAQLAGWREQD---IHFERFAAPAMPAAEADPARPVQAPDS 252 Query: 229 SYVAELARSKASVTVPAGKSLLDALLDAGIEVEHSCREGVCGACETKVLEGELEHRDGVL 288 ++ L RS V G+S++ A G+ + SC EG CG+CE+ VLEG+ HRD VL Sbjct: 253 TFELVLQRSGLRCQVLPGQSIVAAAAQVGVVIGTSCGEGFCGSCESTVLEGQPWHRDSVL 312 Query: 289 SKAERAAGKTMMVCVSGCKGARLVLDL 315 S AERA+G+ ++ CVS C G RLVLDL Sbjct: 313 SAAERASGRRILPCVSRCAGTRLVLDL 339 >gi|300310671|ref|YP_003774763.1| flavodoxin reductases (ferredoxin-NADPH reductases) family 1 protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 179 bits (455), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/319 (35%), Positives = 162/319 (50%), Gaps = 10/319 (3%) Query: 6 LSVRVQAMRFEAQGVISVELGLPEEGELPPFEAGAHIDLHLGNGLVRSYSLSNSPTERHR 65 + + V + E + S L + LP +E GAHID+ G++R YSL +R Sbjct: 1 MKLIVDTLTDETGDIRSFRLVRADGAPLPAYEPGAHIDVTGPTGIMRQYSLCGPLEDRCG 60 Query: 66 YVVGVLHDRSSRGGSRYVHEQLRVGATLSISAPRNHFPLEEAAPLSVLIAGGIGITPISC 125 Y + V + +SRGGS +H+ ++ G L + PRN F L+ +AP +L GIG+TP+ Sbjct: 61 YTIAVKRESASRGGSAALHDVVKAGMELEVGTPRNLFALDASAPEHLLFGAGIGVTPLLA 120 Query: 126 MYHHLRAQGKEVVLHYCARSRREAAFTRQLLGQPGVSSHFDDEAGCAPD-----LRAVLS 180 M + L A+ K LHY R+R AAF L P ++H P L L Sbjct: 121 MAYRLWAEEKRFTLHYFVRAREHAAFADLLENAP-FAAHVRFHYAVMPAQMEHYLTVCLE 179 Query: 181 AYPQQAHFYCCGPTPMLNAFESLCEELDLPH-VHIERF---AADKLAALPSGSYVAELAR 236 A ++AH Y CGP P ++A +H+E F A AA G++ +LA Sbjct: 180 AGSKEAHVYTCGPAPFMDAVVKCASATRSEEAIHLEHFQAAPAAPAAAGGDGAFEVKLAS 239 Query: 237 SKASVTVPAGKSLLDALLDAGIEVEHSCREGVCGACETKVLEGELEHRDGVLSKAERAAG 296 S V +P G ++D L GI ++ SCREG+CG C +LEGE +HRD LSK E+AA Sbjct: 240 SGKVVQIPVGIPIVDILAREGIVIDTSCREGICGTCVVPLLEGEPDHRDNCLSKKEKAAN 299 Query: 297 KTMMVCVSGCKGARLVLDL 315 + CVS + LVLDL Sbjct: 300 DQICTCVSRARSGMLVLDL 318 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 934,882 Number of extensions: 38339 Number of successful extensions: 112 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 106 Number of HSP's successfully gapped: 4 Length of query: 315 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 230 Effective length of database: 1,217,395 Effective search space: 280000850 Effective search space used: 280000850 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)