BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1298.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310338|ref|YP_003774430.1| glyoxalase II protein [Herbaspi...   167   1e-42

>gi|300310338|ref|YP_003774430.1| glyoxalase II protein
           [Herbaspirillum seropedicae SmR1]
          Length = 308

 Score =  167 bits (422), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/286 (34%), Positives = 141/286 (49%), Gaps = 7/286 (2%)

Query: 1   MDVLGIDEIIYGADDLPTCRRFFLDWGMVLVQESATELVFESQNACRVIVRDSADPRLPA 60
           M+++G D +++G DDLP CR++ LD+G+    + A    FE+ +   V++R   D  LP 
Sbjct: 1   MNIIGPDALVFGVDDLPACRQYLLDYGL----KDAGGDRFEALDGTAVVLRAKDDASLPP 56

Query: 61  AIEEGPTLREVVWGVASPAVLDKFASRIAGLPGFVNDGKRVGCRDPNGLAVRFQVSLKRE 120
           A+     LRE V+GVA  A LD   + +            V   D  G A+ FQ++++R 
Sbjct: 57  AMGTASLLRETVYGVADSATLDAIETELRRDREVSRRDGVVRSVDDMGFALAFQLTVRRP 116

Query: 121 VTLECARMNTWNEKNRINQRS--PIYERATPIEVGHVVFFVKDVKACEKFYCEHFGFVPS 178
           +TL   R+N      R       P    A P  + HVV+FV D    E FY    GFV +
Sbjct: 117 LTLPAERVNGPGHAQRAPNELGLPPELPALPRTLSHVVYFVPDAAKAEAFY-HRLGFVCT 175

Query: 179 DRYPQRGAFLRCADVGGHHDIFLLQPPQARAGLNHVAFTVRDIHEVFGGGMHMSRQGWET 238
           DR+   G FLR A    HH +F++Q P    G  H  F +    E+   G     +G+++
Sbjct: 176 DRFTGVGPFLRPAGTLDHHTLFMIQTPPFMKGCEHFTFHMGGPTELLLAGTRFVEKGYQS 235

Query: 239 QLGPGRHPISSAYFWYFKNPAGGLIEYYADEDQLDAQWEPREFEPG 284
             GPGRH   S +FWYF +P G  +EY AD D  D  W  RE   G
Sbjct: 236 FWGPGRHRFGSNWFWYFNSPLGCHVEYDADMDLHDQSWAAREVPMG 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,151,466
Number of extensions: 51092
Number of successful extensions: 123
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)