BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1296.p
         (266 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313963|ref|YP_003778055.1| L-aspartate dehydrogenase [Herb...   100   1e-22

>gi|300313963|ref|YP_003778055.1| L-aspartate dehydrogenase
           [Herbaspirillum seropedicae SmR1]
          Length = 257

 Score =  100 bits (249), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/259 (34%), Positives = 130/259 (50%), Gaps = 14/259 (5%)

Query: 2   LHVSMIGCGAIGLGVME-ILKSDPEVAFDLVVV--PEAHMERARSAVSTLAPAARVVSRL 58
           ++V++ G GAIG  V   I K  P +    V V  P+A  ER R       PA   ++ L
Sbjct: 1   MNVAIAGLGAIGWAVAHAIDKGMPGITLSAVAVRDPDAAAERLRMLAHP--PACVALASL 58

Query: 59  GEERPDLLIECAGHQAIGEHIIPALQRGIACMVVSIGAL-SEPGLVEQLEAAARTGHTQV 117
            +   D+++ECAG   + E   P L+ G   + +S G   S P L    +       +Q+
Sbjct: 59  ADYG-DVVVECAGAHVLREIADPVLESGRQLVAMSAGGFVSSPALALLWQ----RYRSQI 113

Query: 118 QLLSGAIGAIDALAAAKVGGLDSVVYTGRKPPQAWKETPAESV--VDLDGLTQAAMIFEG 175
            + SGA+G +DA+AA   G +D+V     KP  A +  P  +   +DL  LT    +F G
Sbjct: 114 HIPSGALGGLDAVAAMAEGHIDTVRLVSTKPAAALRGAPGLTQLGIDLQSLTGPTQVFGG 173

Query: 176 SAREAARLYPKNANVAATLSLAGLGLDDTRVRLYADPGVSENVHHVEARGAFGGFELTMR 235
           +A +A  L+P N NVAA L+LAG G   T V L+ DP    N H VE +   G    +M 
Sbjct: 174 TAAQALELFPDNLNVAAALALAGAGAHRTMVELWLDPHARTNRHEVEVQADSGRLRFSMD 233

Query: 236 GKPLAANPKTSALTVYSVV 254
             P ++NP+TS+L   SV+
Sbjct: 234 AMP-SSNPRTSSLAAQSVL 251


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 790,882
Number of extensions: 30307
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 182
Effective length of database: 1,222,130
Effective search space: 222427660
Effective search space used: 222427660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)