BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1289.p (287 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312968|ref|YP_003777060.1| nitrate/sulfonate/bicarbonate A... 130 1e-31 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 119 3e-28 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 107 1e-24 gi|300309803|ref|YP_003773895.1| nitrate/sulfonate/bicarbonate A... 107 2e-24 gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate A... 90 2e-19 >gi|300312968|ref|YP_003777060.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 283 Score = 130 bits (328), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 74/201 (36%), Positives = 112/201 (55%) Query: 82 AQLLQHFGITAMEVVLGFFFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPL 141 A++ H IT E VL F G + GLA+G+ L LSP A A+L PY+ A P+V AP+ Sbjct: 77 AEIYSHLLITLTETVLAFVIGTVFGLAIGLWLALSPTASAILDPYVKAANSMPRVILAPI 136 Query: 142 FVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFR 201 F MW G I+ K+ +AV +VFF + NV ++ V P ++ R L A Q+ V Sbjct: 137 FAMWFGLGIWSKVALAVTLVFFIVFFNVYQGVKEVSPVVLANARMLGANARQLLRTVYLP 196 Query: 202 SALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVSIVALTLIG 261 SA +FS L + L+ +G VGE +G +G+GYL++ EG + VF IV LT+ Sbjct: 197 SATSWVFSSLHTSIGLAFVGAVVGEYLGSARGVGYLILQAEGTFDINTVFAGIVVLTIFA 256 Query: 262 VVTYGMVVWAERKVLHYLPRA 282 +V V E++++ + P++ Sbjct: 257 LVLDLAVGVIEKRLMKWQPKS 277 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 119 bits (298), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 74/250 (29%), Positives = 125/250 (50%), Gaps = 2/250 (0%) Query: 32 EKARTVCGSLLLLLLFLAAWQWGPGLLGLPEYILPNFMQVLREGVVMWNNAQLLQHFGIT 91 +A T LLL+ L WQ+ + + ++I P+ +L+ V + +H T Sbjct: 10 NRAATTLAPWFLLLVILGVWQFICSVWQVSDFIFPSPGSILQAMVDY--AGPITEHALST 67 Query: 92 AMEVVLGFFFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFVMWLGYTIY 151 ++GF ++G+ +G +G SP A P + A PK AF P+ V+W G Sbjct: 68 FWVTMVGFAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAG 127 Query: 152 PKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSALPALFSGL 211 P I+ A LI FFPIM+N+ + + T++P++ +++R L A R I V ++P F+ L Sbjct: 128 PAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASL 187 Query: 212 RIASTLSVIGVTVGELVGGNQGLGYLLVDGEGQGNTAAVFVSIVALTLIGVVTYGMVVWA 271 ++A TL+ +G TV E+ NQG+GYLLV F +V + + + Y + Sbjct: 188 KVAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAII 247 Query: 272 ERKVLHYLPR 281 E++ + R Sbjct: 248 EKRTTGWAHR 257 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 107 bits (267), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/219 (30%), Positives = 119/219 (54%) Query: 60 LPEYILPNFMQVLREGVVMWNNAQLLQHFGITAMEVVLGFFFGALLGLAVGVALGLSPRA 119 +P +LP ++ + +LL H + V GF G+ L +A+G+ +G+S RA Sbjct: 48 IPARLLPPPSELAHTLWSLAQRGELLPHIAASLARVAAGFVIGSALAVALGLLVGISRRA 107 Query: 120 EAMLSPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPD 179 EA+L P AL+ P +A+ PL ++WLG PK+++ + FFP+ +N+++ IR +D Sbjct: 108 EALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRDIDHK 167 Query: 180 MVNLVRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLV 239 ++ + T + + ++LP LF+GLR +L+ + + EL+ +G+GYLL Sbjct: 168 LIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVGYLLS 227 Query: 240 DGEGQGNTAAVFVSIVALTLIGVVTYGMVVWAERKVLHY 278 DG V +I+ L L+G ++ G++ E+K L + Sbjct: 228 DGRESSRPDLVLAAILILALLGKLSDGLLRAVEQKSLGW 266 >gi|300309803|ref|YP_003773895.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 267 Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 10/233 (4%) Query: 25 VRRPALSEKARTVCGSLLLLLLFLAAWQWGPGLLGLPEYILPNFMQVLREGVVMWNNAQL 84 V RP A + + LLL+ WQ LL +P Y++P +++ W+ L Sbjct: 9 VNRPGFWRVAAPLIIGIALLLM----WQIVCTLLEVPPYLVPTPALIVKTLAADWS--ML 62 Query: 85 LQHFGITAMEVVLGFFFGALLGLAVGVALGLSPRAEAMLSPYILALQIAPKVAFAPLFVM 144 + +T L F +LG+A+ S E L PY + LQ+ P VA APL ++ Sbjct: 63 MASLLVTLKITFLAFALAVVLGVAIAFVFVQSRFIEISLFPYAIILQVTPIVAIAPLIII 122 Query: 145 WLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNLVRTLNAGRWQIFHLVEFRSAL 204 W+ T + A ++ FPI+ N +R+V+P ++NL R A RWQ + SAL Sbjct: 123 WVKDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSAL 182 Query: 205 PALFSGLRIASTLSVIGVTVGELVGGN----QGLGYLLVDGEGQGNTAAVFVS 253 P F GLRI+S L++IG V E V G GL Y ++ Q N +F + Sbjct: 183 PYFFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAA 235 >gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 284 Score = 90.1 bits (222), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 131/279 (46%), Gaps = 11/279 (3%) Query: 12 SSPEPISTAAVAAVRRPALSEKARTVCG-SLLLLLLFLAAWQ------W-GPGLLGLPEY 63 S + AAV A + + + + V G + +L++ L W+ W P P Sbjct: 8 QSAATMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPFFFSQPSL 67 Query: 64 ILPNFMQVLREGVVMWNNAQLLQHFGITAMEVVLGFFFGALLGLAVGVALGLSPRAEAML 123 I+ + EG + L +T E VLGF G++ G+ G+ LG + + Sbjct: 68 IVAQIYDWMVEGT---SQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLLSDVF 124 Query: 124 SPYILALQIAPKVAFAPLFVMWLGYTIYPKIIVAVLIVFFPIMINVLSAIRTVDPDMVNL 183 S YI P+V +FV+ G + K+ +AV++VFF + N +R D M+ Sbjct: 125 SLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYMIAN 184 Query: 184 VRTLNAGRWQIFHLVEFRSALPALFSGLRIASTLSVIGVTVGELVGGNQGLGYLLVDGEG 243 + L A R Q+ V SAL + + L ++ +++G VGE +G QG+G L+ +G Sbjct: 185 AQILGASRRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLISTAQG 244 Query: 244 QGNTAAVFVSIVALTLIGVVTYGMVVWAERKVLHYLPRA 282 N + VF +++ L ++ + ++ ER++L + P+A Sbjct: 245 AFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQA 283 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.141 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 815,296 Number of extensions: 31298 Number of successful extensions: 187 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 184 Number of HSP's successfully gapped: 14 Length of query: 287 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 203 Effective length of database: 1,222,130 Effective search space: 248092390 Effective search space used: 248092390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)