BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1288.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate A...    59   5e-10

>gi|300309986|ref|YP_003774078.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 328

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 128/280 (45%), Gaps = 24/280 (8%)

Query: 47  FAPWVLAQHKGYYADENLK-----VSFIVAKGGVDVAKQIGAGNAVIGGAIGDTPIVVRA 101
           ++P  L   K  + +E+LK     V +++++G     + + + +   G   G   ++ RA
Sbjct: 42  YSPPSLVLRKFGWLEEDLKAQGTEVKWVLSQGSNRALEYLNSDSVDFGSTAGLAALLARA 101

Query: 102 NGIPVKAIAVLGAGSVTMVAANPADGIKSLKDLKGKTVTVMSYTDTTYYAFLGSLKTAGL 161
           NG PVKA+ +      T +A      +KS+ +LKGK +     TD  Y   L +L   GL
Sbjct: 102 NGNPVKAVYIYSRPEWTALAVGKESPVKSINELKGKKIAATKGTD-PYLFLLRALHENGL 160

Query: 162 SRTDLQI----QAAGPAGVWQLYTSGKSQAFAGV-PDWVVNASDAGAKLELLDNGGFKSM 216
            ++D++I     A G A + Q    G+  A+AG+ P    +  +AG++L +  N  F + 
Sbjct: 161 KKSDVEIVHLQHADGRAALEQ----GRVAAWAGLDPHLAASELEAGSRL-IYRNVNFNTY 215

Query: 217 AQAILASDDTIKKNPELLKRLVRATLRGMQDIMKDPKAAADDYVAALPSYKGKEASIQAT 276
              +  SD    ++P+ +KR++ A  R    I+  P     D   AL S + K ++  A 
Sbjct: 216 G-FLNVSDSFAARHPDQVKRVIAAYERARSWIIAHP-----DETVALLSEESKLSAPVAR 269

Query: 277 FEMYNKYVYANQKTLGQIDAARMEAVQKFYVSEGIVAKAT 316
            ++  K    +Q  +G+     + A     + E +V   T
Sbjct: 270 LQL--KRNDFSQPQIGREHIEALRAAAPILLEEDLVKSGT 307


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 808,513
Number of extensions: 30012
Number of successful extensions: 152
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)