BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1287.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate A... 217 9e-58 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 195 3e-51 gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 190 1e-49 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 186 1e-48 gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate A... 173 1e-44 >gi|300312969|ref|YP_003777061.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 217 bits (552), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 109/251 (43%), Positives = 164/251 (65%), Gaps = 2/251 (0%) Query: 4 IEFRKVGKSFVDRQT-AQARAAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLPS 62 ++F + +FV + +Q AV+N +L+I GE VS++GP+GCGKSTLLN+GAGL PS Sbjct: 5 LQFDNITCTFVSKDDRSQRYTAVANTDLAIAPGEFVSVVGPTGCGKSTLLNVGAGLLQPS 64 Query: 63 EGEVFVGGEKVTKPVRKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIADELLA 122 G V V GE++ R+ +M Q + LMPWR+ NV GL+ G + + ++ LA Sbjct: 65 SGSVKVFGEELKGINRRAGYMFQAEALMPWRSALQNVIAGLQYRGHEEKAAAELGEQWLA 124 Query: 123 KCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAKM 182 + L+GF + YP+QLSGGMR+R ALA+TL +DP ++L+DEPFSALD QT+ +++ ++ + Sbjct: 125 RVGLQGFGDRYPHQLSGGMRKRVALAQTLILDPDIILMDEPFSALDIQTRQLMENEVLDL 184 Query: 183 LYEKQKTALFITHDLVEAIALSDRLLVMSERPGT-IVEEIEVKLPHRDNPLERRKLPEIG 241 K+K LFITHDL EAIA+SDR++V++ PGT + E + LP + E R P Sbjct: 185 WNAKKKAVLFITHDLDEAIAMSDRVIVLAAGPGTHPIGEFRIDLPRPRDVAEIRMHPRFV 244 Query: 242 PLQGRLMELLK 252 L ++ ++L+ Sbjct: 245 ELHQQIWDVLR 255 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 195 bits (495), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 144/225 (64%), Gaps = 5/225 (2%) Query: 4 IEFRKVGKSFVDRQTAQARAAVS--NVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLP 61 IE R V F+ TA RA V+ + ++S+ GE V+++GP+GCGKST L++ GL P Sbjct: 22 IELRNVSCRFI---TADGRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKP 78 Query: 62 SEGEVFVGGEKVTKPVRKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIADELL 121 + GEV V G+ V ++ F+ Q D + PWR++R NV G G +A+ +ADE + Sbjct: 79 TLGEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWI 138 Query: 122 AKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAK 181 + L F +HYP+QLSGGMR+R ALA+T P++LL+DEPFSALD QT+ ++Q +L + Sbjct: 139 RRVGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLR 198 Query: 182 MLYEKQKTALFITHDLVEAIALSDRLLVMSERPGTIVEEIEVKLP 226 + + +F+THDL EAIAL+D++ V++ RP T+ + LP Sbjct: 199 LWSAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLP 243 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 190 bits (482), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 99/228 (43%), Positives = 142/228 (62%), Gaps = 4/228 (1%) Query: 24 AVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLPSEGEVFVGGEKVTKPVRKVAFM 83 A+ ++NL I G+ V ++GPSGCGKSTLLN AG LPS G++ + V++P + Sbjct: 28 ALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSGQILTDDKVVSEPGPDRGMV 87 Query: 84 LQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIADELLAKCHLKGFEEHYPYQLSGGMRQ 143 Q+ L PW + NV GLEI G +AE + +LL K L F +P LSGGMRQ Sbjct: 88 FQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDKLGLIDFRTRFPKDLSGGMRQ 147 Query: 144 RAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAKMLYEKQKTALFITHDLVEAIAL 203 R A+AR LA+D ++L+DEPF ALDA T+ LQ +L ++ E +KT +F+TH + EAI L Sbjct: 148 RVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIWDEFRKTIVFVTHSIEEAIYL 207 Query: 204 SDRLLVMSERPGTIVEEIEVKLPHRDNPLERRKLPEIGPLQGRLMELL 251 +DR++VM+ RPGT+ ++ V LP +P + PE L+ L +L+ Sbjct: 208 ADRIVVMTYRPGTVKRDMLVNLPRLRDPAD----PEFNALKRELGQLV 251 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 186 bits (473), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 102/259 (39%), Positives = 146/259 (56%), Gaps = 11/259 (4%) Query: 2 IEIEFRKVGKSFVDRQTAQARAAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLP 61 +++ F V K F D + I SGE+V+++GPSGCGKSTLL+M AGL P Sbjct: 1 MKLSFNNVAKHFGDLHV------IEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKP 54 Query: 62 SEGEVFVGGEKVTKPVRKVAFMLQKDLLMPWRNIRANVTLGLEIDGMGQAERCRIADELL 121 S G V G+ + P + M Q++ L PW ++ NV L LE + + + A L Sbjct: 55 SSGSVAGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQARVWL 114 Query: 122 AKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQQDLAK 181 LKGFE +YP+Q+SGGMRQRAALAR P+ LLLDEPF ALDA T+M LQ L Sbjct: 115 ENVKLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALRD 174 Query: 182 MLYEKQKTALFITHDLVEAIALSDRLLVMSERPGTIVEEIEVKLPHRDNPLERRKLPEIG 241 ++ ++ T + +THD+ EA+ L+DR+ V S RP +++E L H + + L E Sbjct: 175 LIRQQGPTVVLVTHDVDEALFLADRIFVFSPRPAKVLKEF--NLVHHE---KTHDLSEFA 229 Query: 242 PLQGRLMELLKVGKETAEL 260 ++ ++ LL + E E Sbjct: 230 AIRRDILCLLGIHAEQDEF 248 >gi|300313547|ref|YP_003777639.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 173 bits (439), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 138/237 (58%), Gaps = 12/237 (5%) Query: 4 IEFRKVGKSFVDRQTAQARAAVSNVNLSIKSGEVVSIIGPSGCGKSTLLNMGAGLYLPSE 63 ++FR V ++ A AV +++L ++GE ++I+GPSGCGKST + + GL P+ Sbjct: 6 VDFRHVYLAY----DGAAEFAVEDIDLQTRAGEFIAIVGPSGCGKSTFMKLATGLKQPNR 61 Query: 64 GEVFVGGEKVTKPVRKVAFMLQKDLLMPWRNIRANVTLGLEI-------DGMGQAERCRI 116 G V + G+ VT P++ V Q L+PWR NV L LEI +AE Sbjct: 62 GSVVIDGQTVTGPLKFVGMAFQAPTLLPWRTTLDNVLLPLEIVEPYRRDFKQKKAEYTER 121 Query: 117 ADELLAKCHLKGFEEHYPYQLSGGMRQRAALARTLAVDPQVLLLDEPFSALDAQTKMVLQ 176 A LL L G+ + +P+QLSGGM+QRA++ R L +P++LLLDEPF ALDA T+ L Sbjct: 122 ALSLLKTVGLDGYADKFPWQLSGGMQQRASICRALIHEPKMLLLDEPFGALDAFTREELW 181 Query: 177 QDLAKMLYEKQKTALFITHDLVEAIALSDRLLVMSERPGTIVEEIEVKLPHRDNPLE 233 L + E++ + +THDL EA L+D + VMS+RPG IV E LP R PLE Sbjct: 182 CVLRDLWAERRFNVILVTHDLREAAFLADTIYVMSKRPGRIVVRRENPLP-RPCPLE 237 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 765,067 Number of extensions: 31553 Number of successful extensions: 432 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 294 Number of HSP's successfully gapped: 133 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)