BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1286.p (224 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 112 2e-26 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 109 2e-25 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 108 4e-25 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 101 6e-23 gi|300313889|ref|YP_003777981.1| amino acid ABC transporter perm... 98 6e-22 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 112 bits (281), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 3/200 (1%) Query: 26 WTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFFRSFPPLVLLILIYFGA 85 WT V LS L +G G L+ +LA S +R ++++ + P L+LL ++YFG Sbjct: 19 WTLV-LSALAFVLGGAGGFLV-MLARISPHAWLRRPAILFIECVQGIPLLILLFIVYFGL 76 Query: 86 PFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAARSTGLSRTQALAYVVV 145 GL LP L+A L M S+Y ++ R +E++P Q EA+ L+R Q L V++ Sbjct: 77 SVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEASECLSLTRWQTLRLVII 136 Query: 146 PQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLVYNPSPI-VLAALLYLV 204 PQA R +LP +G +++IK+T++ASV+ EL R + + ++ P + +L Y + Sbjct: 137 PQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPFLVFLLVGSFYFL 196 Query: 205 LLLPLVRWLSRLEHRGRTSH 224 L PL RW + +E + SH Sbjct: 197 LCYPLSRWSASMERKLNVSH 216 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/203 (35%), Positives = 114/203 (56%), Gaps = 6/203 (2%) Query: 20 FLLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFFRSFPPLVLLI 79 FLL T+ LS L G I+G ++AL+ T S +R+ AVY+ + P L+LL Sbjct: 12 FLLEAARWTLLLSALAFLGGGIAGFIVALMRT-SHLAPLRLLSAVYIQIIQGTPVLILLF 70 Query: 80 LIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAARSTGLSRTQA 139 L ++G G +LP ++A + +S+Y E+ R IE+VP Q EA+ + ++R Q Sbjct: 71 LSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEASTALAMTRWQQ 130 Query: 140 LAYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLVYNP---SPIV 196 L YV++PQAVR +LP VG ++++K T+IAS++ L EL + + + + P PIV Sbjct: 131 LRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNATFQPFLVFPIV 190 Query: 197 LAALLYLVLLLPLVRWLSRLEHR 219 A +Y V PL R+ LE + Sbjct: 191 --AGIYFVFCYPLSRFAFALERK 211 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 108 bits (269), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 75/215 (34%), Positives = 116/215 (53%), Gaps = 2/215 (0%) Query: 11 LEVYRQVLPFLLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFFR 70 LE+ +Q P L G+ T+ +L + G++ G +LA+ A R + A+YV R Sbjct: 6 LELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAV-ARIVPWRPIHWPAAIYVSMMR 64 Query: 71 SFPPLVLLILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAAR 130 P LV + ++Y+G P +G+E L A L N S+Y +E LR I V GQ AA Sbjct: 65 GTPLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAF 124 Query: 131 STGLSRTQALAYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLVY 190 S GL+ Q L Y++VPQAVR A+P + I +IK T++ SV+ + EL+ ++ ++ + Sbjct: 125 SVGLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTF 184 Query: 191 NPSPI-VLAALLYLVLLLPLVRWLSRLEHRGRTSH 224 P P+ V AA +Y +L L RLE + +H Sbjct: 185 RPLPLYVAAAAIYWMLSLCFEALQHRLEKKLGKAH 219 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 101 bits (251), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 3/205 (1%) Query: 21 LLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFFRSFPPLVLLIL 80 L +WT V LSL+ G ++G ++AL S + +R + Y+ + P LV+L + Sbjct: 13 LQAAVWTVV-LSLVAFVFGGVAGFVIALWRV-SPNAVLRGIASGYIQVVQGIPLLVILFV 70 Query: 81 IYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAARSTGLSRTQAL 140 YFG G +L L+A + F +++ E+ R I++VP Q EA+ G +R + L Sbjct: 71 AYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASECLGFNRFEQL 130 Query: 141 AYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLVYNPSPIV-LAA 199 V++PQAV+ A P VG ++++K T++ASV+ +L R + + + P + A Sbjct: 131 TKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTFQPFTVFGCVA 190 Query: 200 LLYLVLLLPLVRWLSRLEHRGRTSH 224 L+Y L PL E + SH Sbjct: 191 LIYFCLCFPLSALSKHFERKLNVSH 215 >gi|300313889|ref|YP_003777981.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 277 Score = 97.8 bits (242), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 2/188 (1%) Query: 19 PFLLGGLWTTVWLSLLVIPIGVISGLLLALLATQSRSRTVRIAVAVYVDFFRSFPPLVLL 78 P L G W T+ ++ L + +GV G+ +A A S R + + Y++ R+ P LV + Sbjct: 15 PVFLHGAWLTLKMTTLAVIVGVAIGIFVAF-AKNSPHRWLARGCSAYIEVVRNTPFLVQI 73 Query: 79 ILIYFGAPFLGLELPKLLAVALGFMFNNSSYFAEVLRAGIESVPSGQMEAARSTGLSRTQ 138 L+YFG LG+ +P A L + N ++Y AE++RAG++SVP GQ+EAA+ GLS + Sbjct: 74 FLLYFGLASLGIRMPTFAAAVLAMIINIAAYAAEIIRAGLDSVPRGQIEAAQCLGLSVWR 133 Query: 139 ALAYVVVPQAVRNALPDLVGNGIEVIKLTTIASVVALPELLRVARDAQSLVYNP-SPIVL 197 +V++ A+ P L + +++ + +AS ++ EL +A QS + ++ Sbjct: 134 IRWHVMLQPAIERVYPALTSQFLLMMQASAMASQISAEELTAIANTVQSDTFRSLETYLV 193 Query: 198 AALLYLVL 205 A LYLVL Sbjct: 194 VAALYLVL 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.142 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 619,153 Number of extensions: 24787 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 203 Number of HSP's successfully gapped: 19 Length of query: 224 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 142 Effective length of database: 1,231,600 Effective search space: 174887200 Effective search space used: 174887200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)