BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1285.p (223 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 117 7e-28 gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transpo... 102 2e-23 gi|300309410|ref|YP_003773502.1| glutamine ABC transporter perme... 99 2e-22 gi|300310495|ref|YP_003774587.1| amino acid ABC transporter perm... 90 1e-19 gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transpo... 89 4e-19 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 117 bits (293), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 69/189 (36%), Positives = 114/189 (60%) Query: 12 EIAARYWPDILRGMGVTVLLSLAVIVSGLLLGLLLAVLRATGKRGLVWLVVAFADVMRAL 71 E+ + P + +G+G T+L +LA ++ GL+LG +LAV R R + W + +MR Sbjct: 7 ELLQQAAPTLAKGVGYTLLFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGT 66 Query: 72 PPLILIIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRGQSEAARST 131 P L+ I V+++ P + + S TA L L+L +AY ES+ I + RGQ AA S Sbjct: 67 PLLVQIFVVYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSV 126 Query: 132 GLSWGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQAASSNAGNP 191 GL++ QT+ +I+PQA+R+AVP ++N +IS+ K+T+L SV+ ++E++ + + P Sbjct: 127 GLTYFQTLRYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRP 186 Query: 192 TPLMLGAAA 200 PL + AAA Sbjct: 187 LPLYVAAAA 195 >gi|300312813|ref|YP_003776905.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 241 Score = 102 bits (255), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 112/223 (50%), Gaps = 12/223 (5%) Query: 8 FFNAEIAARYWPD-ILRGMGVTVLLSLAVIVSGLLLGLLLAVLRATGKRGLVWLVVAFAD 66 F A + + D +L G+GVTV L L+ + L+LG L +LR R L + + Sbjct: 10 FLQAPSTGQTYLDWLLSGLGVTVALGLSAWILALVLGTFLGILRTLPNRALSGFAACYVE 69 Query: 67 VMRALPPLILIIVLFFAFPYI----DLAMS------SFTATWLALTLVLAAYAEESIWAG 116 + R +P L+ I + +FA P + D + F L L + AA E + +G Sbjct: 70 LFRNVPLLVQIFIWYFAMPELLPWGDAVKALPPMTQQFVMAMLCLGMFTAARVCEQVRSG 129 Query: 117 IASLPRGQSEAARSTGLSWGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSE 176 I SLPRGQ A + GL+ GQT V+LP A+R+ +PPLT+ ++I KN+A+ S + L E Sbjct: 130 IESLPRGQKGAGLALGLTLGQTYLFVLLPMAMRIVLPPLTSEFLNIFKNSAVASTIGLLE 189 Query: 177 ILNTAQAASSNAGNPTPLMLGAA-AYLVIFIPVVLLARWLETR 218 + + P + AY++I I V+ L R LE + Sbjct: 190 LAAQGRQLVDYTAQPYEAFIAVTLAYMLINICVMSLMRILERK 232 >gi|300309410|ref|YP_003773502.1| glutamine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 250 Score = 99.0 bits (245), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/242 (31%), Positives = 121/242 (50%), Gaps = 29/242 (11%) Query: 7 TFFNAEIAARYWPDILRGMGVTVLLSLAVIVSGLLLGLLLAVLR-ATGKRGL-------- 57 +FF EI Y P + G +T+ ++ +++G GL+L V R A + G Sbjct: 3 SFFQWEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLCYC 62 Query: 58 -VWLVVAFADVMRALPPLILIIVLFFAF-PYI-----------DLA------MSSFTATW 98 W + + +R P + I+++ FA P + DLA +F + Sbjct: 63 VQWPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAV 122 Query: 99 LALTLVLAAYAEESIWAGIASLPRGQSEAARSTGLSWGQTMAAVILPQALRMAVPPLTNR 158 LA+TL AY E AGI S+ RGQSEA+RS G+S+ T+ V+LPQA R +PPL N Sbjct: 123 LAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYLATLRRVVLPQAFRRMLPPLGNN 182 Query: 159 VISITKNTALGSVVALSEILNTAQAAS-SNAGNPTPLMLGAAAYLVIFIPVVLLARWLET 217 I+I K+++L S + L+E+ A+ S + A P + + Y +I + + L R LE Sbjct: 183 AIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWLITLALSALVRHLEA 242 Query: 218 RW 219 R+ Sbjct: 243 RY 244 >gi|300310495|ref|YP_003774587.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 218 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 101/177 (57%), Gaps = 1/177 (0%) Query: 17 YWPDILRGMGVTVLLSLAVIVSGLLLGLLLAVLRATGKRGLVWLVVAFADVMRALPPLIL 76 + P +L+G VTV +++ + ++GLLLA+++ + + + +++R LP ++ Sbjct: 9 FLPILLKGALVTVEVTIYSFLLSSVIGLLLALMKVSRLKPVALAGATIVNIIRGLPIIVQ 68 Query: 77 IIVLFFAFPYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPRGQSEAARSTGLSWG 136 + ++F P I + +S+F A + L + +AY E+ AGI ++ GQ EAA+S G+ Sbjct: 69 LFYIYFVLPDIGIQLSAFQAGVVGLGIAYSAYQAENFRAGIEAVDMGQIEAAQSIGMRGP 128 Query: 137 QTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQA-ASSNAGNPT 192 M V+LPQA R+A+PP N ++ + K+++L S + + E+ Q ASS N T Sbjct: 129 LIMRRVVLPQAFRIALPPYGNTLVMMLKDSSLVSTITVLEMTRAGQMIASSTFQNMT 185 >gi|300312812|ref|YP_003776904.1| glutamate/aspartate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 227 Score = 88.6 bits (218), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 25/221 (11%) Query: 19 PDILRGMGVTVLLSLAV----IVSGLLLGLLLAVLRATGKRGLVWLVVAFADVMRALPPL 74 P LR +G +L+SL + IV G++ G LLA++R + L W + ++ R++P L Sbjct: 12 PAALRVLGDGLLVSLKITLVAIVFGMVWGTLLAMMRLSRHSPLQWFAAGYVNLFRSIP-L 70 Query: 75 ILIIVLFFAF------------PYIDLAMSSFTATWLALTLVLAAYAEESIWAGIASLPR 122 +++++ FF P DL M T+ +A L AAY E I AGI S+ R Sbjct: 71 VMVLLWFFLIVPQLLQKLFGLSPANDLRM---TSALVAFALFEAAYYAEIIRAGINSVSR 127 Query: 123 GQSEAARSTGLSWGQTMAAVILPQALRMAVPPLTNRVISITKNTALGSVVALSEILNTAQ 182 GQ AA + GL++ Q M VILPQA R VP L + I + ++T+L V AL++ A Sbjct: 128 GQMAAAYALGLTYPQAMGMVILPQAFRNMVPLLLTQGIVLFQDTSLVYVSALADFFGRAY 187 Query: 183 AASSNAGNPTPLMLGAAA-YLVIFIPVVLLARWLETRWRWK 222 + G ++ A A Y +I + L+ + R+R K Sbjct: 188 SIGERNGRIIEMLFVAGAVYFIICFSMSLMVK----RYRKK 224 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.327 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 528,955 Number of extensions: 15941 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 19 Length of query: 223 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 141 Effective length of database: 1,231,600 Effective search space: 173655600 Effective search space used: 173655600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)