BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1284.p (249 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPas... 290 5e-80 gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPas... 261 3e-71 gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPa... 246 1e-66 gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPa... 243 2e-65 gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPa... 242 2e-65 >gi|300309411|ref|YP_003773503.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 240 Score = 290 bits (743), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 139/239 (58%), Positives = 184/239 (76%) Query: 7 ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66 ++++ L K + +LRGID +R +++CVIGPSGSGKST LRC N LEE S G I + Sbjct: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 Query: 67 DGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRARRA 126 +GV + + +LNA+R ++GMVFQ+FNL+PHM+VL N+++A +V+K S EA A + Sbjct: 61 EGVKLNDPKVNLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKLSRREAVLVAEKL 120 Query: 127 LEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQVMR 186 L++VG+L+K AFP QLSGGQQQRV IAR +A+EPKVMLFDEPTSALDPELVG VL VM+ Sbjct: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLTVMK 180 Query: 187 QLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFLARL 245 QL E GMTM+VVTHEM FAR +DRV+F+D GVI+EEGPP+Q+ G+P RT+ FL ++ Sbjct: 181 QLAEEGMTMVVVTHEMGFAREVSDRVLFIDQGVIMEEGPPQQVLGDPHHERTRDFLRKV 239 >gi|300311603|ref|YP_003775695.1| glutamine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 261 bits (668), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 137/242 (56%), Positives = 174/242 (71%), Gaps = 5/242 (2%) Query: 6 PILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIV 65 PI+E+ GL KS+ + VL+ +DL V P Q++ VIGPSGSGKST LRC N LE+ G + Sbjct: 4 PIVEVSGLRKSFGAHVVLKDLDLSVAPSQVVVVIGPSGSGKSTFLRCLNGLEKAEGGTVK 63 Query: 66 VDGVDI-----MHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAE 120 V G + M A L+ +R ++GMVFQ FNL+PH++VL N+ LA ++ S A+ Sbjct: 64 VCGRPVVEGGRMMPEAMLDLLRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGMSRKAAQ 123 Query: 121 RRARRALEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGS 180 ++A + LE+VG+ KA A+PG LSGGQ+QRV IAR +A+EP+VMLFDEPTSALDPELVG Sbjct: 124 QQALQLLEKVGLAHKAKAYPGTLSGGQKQRVAIARALAMEPQVMLFDEPTSALDPELVGE 183 Query: 181 VLQVMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKT 240 VLQV+R L GMTM++VTHEM FAR AD VV MD G IVE GPP IF PQQART++ Sbjct: 184 VLQVIRALAAEGMTMIIVTHEMGFAREVADVVVVMDHGSIVEAGPPGAIFTAPQQARTRS 243 Query: 241 FL 242 FL Sbjct: 244 FL 245 >gi|300313168|ref|YP_003777260.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 246 bits (628), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 169/240 (70%), Gaps = 1/240 (0%) Query: 5 APILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQI 64 + I++I LHKS+ N VL G+ L V+ GQ++ +IG SGSGKST+LRC N LE+ AG I Sbjct: 2 SAIVKIKDLHKSFGSNKVLNGVSLDVQKGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDI 61 Query: 65 VVDGVDIMH-ARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRA 123 V G DI H + +L +R+++G+VFQ +NL+PH++V N+ LAL ++K S +A+ A Sbjct: 62 QVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTEQAKTIA 121 Query: 124 RRALEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQ 183 + L+ VG+ K A+P QLSGGQ QRV IAR +A+ P++MLFDE TSALDPEL VL+ Sbjct: 122 HKVLQLVGLENKKDAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLK 181 Query: 184 VMRQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFLA 243 VM L GMTM++VTHEMAFAR AD +VFM G + E GPP+++F +P+ A + F++ Sbjct: 182 VMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEIGPPDELFSHPKTAELQKFVS 241 >gi|300310496|ref|YP_003774588.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 243 bits (619), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/239 (50%), Positives = 162/239 (67%) Query: 7 ILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIVV 66 ++E+ + K + + VL+ + L V G+++C+IGPSGSGKST+LRC N LE G I++ Sbjct: 1 MIEVKRISKCFGRHEVLKDVSLSVAQGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 Query: 67 DGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRARRA 126 DG + D++ +R ++GMVFQ+FNL+PH +VL NV V + A+A A Sbjct: 61 DGQRVDRDGPDIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPIYVNGLARAQARSEAMSL 120 Query: 127 LEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQVMR 186 L++VG+ + A+P QLSGGQQQRV IAR +A++P+ +LFDEPTSALDPELVG VL VMR Sbjct: 121 LDKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 Query: 187 QLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFLARL 245 L GMTM+VVTHEM FAR ADRV F+ G IVE G Q+ PQ ART+ FL R+ Sbjct: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGAAAQVLAEPQHARTQDFLRRV 239 >gi|300310829|ref|YP_003774921.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 244 Score = 242 bits (617), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 122/237 (51%), Positives = 156/237 (65%) Query: 6 PILEIVGLHKSYEGNTVLRGIDLRVRPGQLICVIGPSGSGKSTMLRCCNRLEEPSAGQIV 65 PI+EI + K + N VL GI L V GQ++ +IG SGSGKSTMLRC N LE G I Sbjct: 2 PIVEINNITKRFGSNQVLNGISLSVERGQVVAIIGRSGSGKSTMLRCINGLETIDGGSIT 61 Query: 66 VDGVDIMHARADLNAIRQKIGMVFQQFNLYPHMSVLGNVMLALKKVQKHSHAEAERRARR 125 V G + H L +R+ +GMVFQ +NL+PH++V N+ML+ + V+K + A A + Sbjct: 62 VAGHKLTHKHEHLIELRKDVGMVFQHYNLFPHLTVEENIMLSPRIVKKTATETARETAIK 121 Query: 126 ALEQVGMLEKAAAFPGQLSGGQQQRVGIARGIALEPKVMLFDEPTSALDPELVGSVLQVM 185 L+QVG+ K A+P QLSGGQQQRV IAR +A+EP+VMLFDE TSALDPEL VL+VM Sbjct: 122 VLKQVGLDHKRDAYPEQLSGGQQQRVAIARSLAMEPQVMLFDEVTSALDPELTAEVLKVM 181 Query: 186 RQLREAGMTMLVVTHEMAFARAAADRVVFMDGGVIVEEGPPEQIFGNPQQARTKTFL 242 +L GMTML+VTHEM FAR AD VFM G + E P E+ F +PQ + F+ Sbjct: 182 EELARGGMTMLLVTHEMEFARRVADLTVFMHQGKVWEARPSEEFFADPQTPEARQFI 238 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 716,127 Number of extensions: 26899 Number of successful extensions: 503 Number of sequences better than 1.0e-08: 131 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 148 Length of query: 249 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 166 Effective length of database: 1,226,865 Effective search space: 203659590 Effective search space used: 203659590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)