BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1282.p
         (319 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311942|ref|YP_003776034.1| aliphatic amidase [Herbaspirill...    72   7e-14
gi|300310754|ref|YP_003774846.1| nitrilase [Herbaspirillum serop...    57   1e-09

>gi|300311942|ref|YP_003776034.1| aliphatic amidase [Herbaspirillum
           seropedicae SmR1]
          Length = 343

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 106/248 (42%), Gaps = 48/248 (19%)

Query: 42  GAKMVVFPELALTTFFPRYWMEDQAEVDARFFESE--MPGPQTRPLFELAAQLRIGFYLG 99
           G  +VVFPE +         M D+ E+    FE+   +PG +TR   E     RI    G
Sbjct: 51  GLDLVVFPEYSTHGI-----MYDREEM----FETAAAIPGDETRIFSE---ACRIAGVWG 98

Query: 100 YGELTRDGHH-------YNTSILVDDQARIVARYRKIHLPGHSDHKPDAPFQHLEKKYFE 152
              LT + H        YNT IL++DQ  IV +YRKI            P+  +E  Y  
Sbjct: 99  VFSLTGERHEEHPRKVPYNTLILINDQGEIVQKYRKI-----------MPWTPIEGWY-- 145

Query: 153 VGNDGFGVTDMLGTRIGQCLCNDRRWPETYRVMSLQSARIVT--LGYNTPSWNIHWNEPP 210
            G+  +      G +I   +C+D  +PE +R  +++ A +V    GY  P+         
Sbjct: 146 PGDATYVCDGPKGLKISLIICDDGNYPEIWRDCAMKGAELVVRCQGYMYPAKE------- 198

Query: 211 HLRMFHHLLSLQANAYQNGLWVAAAAKCGFEDGFHMIGGSAIVAPSGEIVAQAQGEEDEV 270
                  ++  +A A+ N L+VA A   GF+  +   G SAIV   G  + +   EE  +
Sbjct: 199 -----QQIMVSKAMAWMNNLYVAVANAAGFDGVYSYFGHSAIVGFDGRTLGECGTEEMGI 253

Query: 271 IFASCDLQ 278
            +A   + 
Sbjct: 254 QYAELSIS 261


>gi|300310754|ref|YP_003774846.1| nitrilase [Herbaspirillum
           seropedicae SmR1]
          Length = 268

 Score = 57.4 bits (137), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 93/224 (41%), Gaps = 25/224 (11%)

Query: 55  TFFPRYW--MEDQAEVDARFFESEMPGPQTRPLFELAAQLRIGFYLGYGELTRDGHH--- 109
              P YW  M           E++  GP    +  LA Q   G +L  G L     +   
Sbjct: 40  VLLPEYWPIMGRHERDKLAHAEADGAGPIQECMASLARQH--GLWLVGGTLPLKADNPDK 97

Query: 110 -YNTSILVDDQARIVARYRKIHLPGHSDHKPDAPFQHLEKKYFEVGNDGFGVTDMLGTRI 168
             NTS++   Q + VARY KIHL      + +    + E +  E G++        G R+
Sbjct: 98  VLNTSLVYGPQGQRVARYDKIHLFNFVRGEEN----YDEARTIEYGHEVQSFEAPFG-RV 152

Query: 169 GQCLCNDRRWPETYRVMSLQSARIVTLGYNTPSWNIHWNEPPHLRMFHHLLSLQANAYQN 228
           G  +C D R+PE YR M   +  ++   +   +   HW            L L+A A +N
Sbjct: 153 GLSVCYDLRFPELYRAMGECALIVMPAAFTYTTGRAHWE-----------LLLRARAIEN 201

Query: 229 GLWVAAAAKCG-FEDGFHMIGGSAIVAPSGEIVAQAQGEEDEVI 271
             +V A+A+ G   +G    G S +V P GEIV+     E  VI
Sbjct: 202 QCYVLASAQGGEHVNGRRTWGHSMLVDPWGEIVSVLPEGEGLVI 245


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,070,227
Number of extensions: 46109
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,217,395
Effective search space: 284870430
Effective search space used: 284870430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)