BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1277.p
         (253 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313542|ref|YP_003777634.1| hydantoin racemase [Herbaspiril...    81   1e-16

>gi|300313542|ref|YP_003777634.1| hydantoin racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 244

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 98/207 (47%), Gaps = 3/207 (1%)

Query: 38  VINPNSTAAVTHGIEAAMAPLRMAGGPVIECLSLSSGPPGIQTQQDVDSVAPQLV-SLAR 96
           +INPN+T ++T  + A    +  AG  V   +S   GP  I++  D     P L+  + R
Sbjct: 5   LINPNTTWSMTEAMTACARQVAAAGTEVTG-VSPEMGPASIESHYDEALAVPGLLQEIER 63

Query: 97  SLRARAAAFVIACYSDPGLYAVREAVDVPVLGIMESGVLTALTLGQRFGVIAILPGSIPR 156
             R    A+VIAC+ DPGL A RE    PV+GI E+ +  A  +   F V+  L  +   
Sbjct: 64  GERDGYDAYVIACFGDPGLSAARELAQGPVIGIAEAAMHMASLIAPSFSVVTTLARTSGM 123

Query: 157 HLRAYGAMGVQSRLAGELAIGLNVTELAD-YNRTLARMCEVGLRLRDTHGADVIVMGCAG 215
                   G+Q       A  + V EL D  +   AR+ +   R     GA+ IV+GCAG
Sbjct: 124 AWHLAERYGMQRFCRNVRACEIAVLELEDPASDARARITDECRRALAEDGAEAIVLGCAG 183

Query: 216 MAVYRDALQEALGIPVVEPSQAAAAMA 242
           MA    A+   +G PV++   AA  +A
Sbjct: 184 MAELCAAIGRDIGAPVIDGVTAAVKLA 210


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 815,232
Number of extensions: 34070
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 170
Effective length of database: 1,226,865
Effective search space: 208567050
Effective search space used: 208567050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)