BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1268.p
         (691 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillu...  1392   0.0  

>gi|300310782|ref|YP_003774874.1| oligopeptidase A [Herbaspirillum
           seropedicae SmR1]
          Length = 691

 Score = 1392 bits (3604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 674/691 (97%), Positives = 683/691 (98%)

Query: 1   MTTTDIAANPLLDFSGYAQFDAIKPEHVTPALDKLLADASRLVTELEAPMTEVTWDNFVE 60
           MTTTDIAANPLLDFSGYAQFDAI+PEHVTPALDKLLADASRLVTELEAPM EVTWDNFV+
Sbjct: 1   MTTTDIAANPLLDFSGYAQFDAIQPEHVTPALDKLLADASRLVTELEAPMAEVTWDNFVK 60

Query: 61  PLESATEKLGRAWSVVGHLNAVMDTPALRATYNENQPRLVEFWTALGQNLALFEKYKALQ 120
           PLESATEKLGRAWSVVGHLN+VMDTPALRATYNENQPRLVEFWT+LGQNLALFEKYKALQ
Sbjct: 61  PLESATEKLGRAWSVVGHLNSVMDTPALRATYNENQPRLVEFWTSLGQNLALFEKYKALQ 120

Query: 121 ASPAFASLSAARRKVVDNAVRDFRLSGAELPEEKKERFAEIQEKQAMLTTRFSENVLDAT 180
           ASPAFASLSAARRKVVDNAVRDFRLSGAEL E+KKERFAEIQEKQAMLTTRFSENVLDAT
Sbjct: 121 ASPAFASLSAARRKVVDNAVRDFRLSGAELAEDKKERFAEIQEKQAMLTTRFSENVLDAT 180

Query: 181 NDFGLFVEDEAELSGLPADVKQAARAAAEKDGKPGYKFTLHFPSYFPVLQYADNRALREQ 240
           NDF LFVEDEAELSGLPADVKQAARAAAEKDGKPGYKFTLHFPSYFPVLQYADNRALRE+
Sbjct: 181 NDFALFVEDEAELSGLPADVKQAARAAAEKDGKPGYKFTLHFPSYFPVLQYADNRALREK 240

Query: 241 IYRANATKASELGAKPEWDNSANIDQILQLRKEEAQLLGYANFAEVSLVAKMAKSPSEVI 300
           IYRANATKASELGAKPEWDNSANIDQILQLRKEEAQLLGYANFAEVSLVAKMAKSPSEVI
Sbjct: 241 IYRANATKASELGAKPEWDNSANIDQILQLRKEEAQLLGYANFAEVSLVAKMAKSPSEVI 300

Query: 301 AFLEDLGQRARPFGQKDYEELKTFAREKLGLDELKAWDSTYASEKLREQRYAFSEQEVKQ 360
           AFLEDLGQRARPFGQKDYEELK FAREKLGLDELKAWDSTYASEKLREQRYAFSEQEVKQ
Sbjct: 301 AFLEDLGQRARPFGQKDYEELKAFAREKLGLDELKAWDSTYASEKLREQRYAFSEQEVKQ 360

Query: 361 YFPEPKVVGGLFQVAQQLFGVQIKPDTAPVWHKDVKFFRIERDGQLVGQFYLDLYARSGK 420
           YFPEPKVVGGLFQVAQQLFGVQIKPD+APVWHKDVKFFRIERDGQLVGQFYLDLYARSGK
Sbjct: 361 YFPEPKVVGGLFQVAQQLFGVQIKPDSAPVWHKDVKFFRIERDGQLVGQFYLDLYARSGK 420

Query: 421 RGGAWMDDARARRLTEQGVQTPIAYLICNFTEPAVVDGVTKPALFTHDEVITLFHEFGHG 480
           RGGAWMDDARARRLT QGVQTPIAYL+CNFTEPAVVDGV KPALFTHDEVITLFHEFGHG
Sbjct: 421 RGGAWMDDARARRLTAQGVQTPIAYLVCNFTEPAVVDGVAKPALFTHDEVITLFHEFGHG 480

Query: 481 LHHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQQLTAHAETGEPLPRALYD 540
           LHHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQQLTAHA+TGEPLPRALYD
Sbjct: 481 LHHMLTQVDEVGVSGISGVEWDAVELPSQFMENFCWEWDVLQQLTAHADTGEPLPRALYD 540

Query: 541 KMIAAKNFQSGLQMLRQVEFSLFDMLIHHEYEVGGQQTVQQLLDSVRDRIAVIRPPEFNR 600
           KMIAAKNFQSGLQMLRQVEFSLFDMLIHHEYEVGG QTVQQLLDSVRDRIAVIRPPEFNR
Sbjct: 541 KMIAAKNFQSGLQMLRQVEFSLFDMLIHHEYEVGGNQTVQQLLDSVRDRIAVIRPPEFNR 600

Query: 601 FQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAATSGNVISLETGRRFQQEILAV 660
           FQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAA SGNVISLETGRRFQQEILAV
Sbjct: 601 FQHSFSHIFAGGYAAGYYSYKWAEVLSADAYSAFEEAAAGSGNVISLETGRRFQQEILAV 660

Query: 661 GGSRPAIESFKAFRGREPSIDALLRHSGMAA 691
           GGSRPAIESFKAFRGREPSIDALLRHSGMAA
Sbjct: 661 GGSRPAIESFKAFRGREPSIDALLRHSGMAA 691


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,106,606
Number of extensions: 87913
Number of successful extensions: 308
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 308
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 599
Effective length of database: 1,184,250
Effective search space: 709365750
Effective search space used: 709365750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 134 (56.2 bits)