BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1260.p
         (110 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310775|ref|YP_003774867.1| transcription regulator protein...   186   3e-49

>gi|300310775|ref|YP_003774867.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 110

 Score =  186 bits (473), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 90/110 (81%), Positives = 98/110 (89%)

Query: 1   MTAPTNIQIIHGADGKPAFVVIPYADYLKEHRAEDEQYVPHEVVAMMVDHQWTAIRSWRE 60
           M APTNIQIIH  DGKPAFVVIPYADYLKE    + QYVPHEVVA+MVDHQWTAIRSWRE
Sbjct: 1   MNAPTNIQIIHDPDGKPAFVVIPYADYLKEQPRVEGQYVPHEVVALMVDHQWTAIRSWRE 60

Query: 61  HLDLTQQEVAARLGISQSAYAQQESSRNLRPSSLKRIAAALGVSIAQLDF 110
           HL+LTQQE+A+RLGISQSAYAQQE+S +LRPSSLK+IA ALGV I QLDF
Sbjct: 61  HLNLTQQEMASRLGISQSAYAQQENSGSLRPSSLKKIAIALGVGIEQLDF 110


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 344,004
Number of extensions: 12320
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 110
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 37
Effective length of database: 1,274,215
Effective search space: 47145955
Effective search space used: 47145955
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 124 (52.4 bits)