BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1258.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310773|ref|YP_003774865.1| exoribonuclease BN transmembran...   544   e-156
gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane p...    60   2e-10

>gi|300310773|ref|YP_003774865.1| exoribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 317

 Score =  544 bits (1401), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 298/317 (94%), Positives = 308/317 (97%)

Query: 1   MLKGGTRAQQAWQMTVAAIDAWITDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHD 60
           M+ GG+R QQAWQMT+AAI+AWI DFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHD
Sbjct: 1   MISGGSRPQQAWQMTMAAINAWIDDFAPSMGAAIAYYTIFSIAPMLVIAIAVAGMLFGHD 60

Query: 61  AAQGEIVNQIRDIVGTEGAFAIQGLLRSVSQPREGMIAAGISVVTLVIGATAVFSELQSA 120
           AAQGEIVNQIRDIVGTEGAFAIQGLL+SVSQPREGMIAAGISVVTLVIGATAVFSELQSA
Sbjct: 61  AAQGEIVNQIRDIVGTEGAFAIQGLLKSVSQPREGMIAAGISVVTLVIGATAVFSELQSA 120

Query: 121 LDRIWRIPVVKRKSGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEG 180
           LDRIWRIP VKRKSGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEG
Sbjct: 121 LDRIWRIPAVKRKSGVWQLARTRLLSFGLILGLGFLLIISLVVSAALAALGRWWGGWFEG 180

Query: 181 WQLVLQLLNFVLSFVVFSTLFSMIYKFMPRVTLSWHDVWIGAVATTVLFIIGKYLIGLYL 240
           WQLVLQLLNFVLSFVVFSTLFSMIYKFMPRVTLSW DVWIGAVATTVLFIIGKYLIGLYL
Sbjct: 181 WQLVLQLLNFVLSFVVFSTLFSMIYKFMPRVTLSWRDVWIGAVATTVLFIIGKYLIGLYL 240

Query: 241 GSTGMTSGFGAAGSFALLLLWIYYSAQIFLLGAEFTWIYANNFGSRARRQKLVNTVQEHH 300
           GSTGMTSGFGAAGSFALLLLWIYYSAQIFLLGAEFTWIYANNFGSRA RQKLVNTV++HH
Sbjct: 241 GSTGMTSGFGAAGSFALLLLWIYYSAQIFLLGAEFTWIYANNFGSRALRQKLVNTVEDHH 300

Query: 301 VSLEQAQQVVRTDAGKR 317
           VS++QAQQVVR   G+R
Sbjct: 301 VSVQQAQQVVRASEGQR 317


>gi|300312602|ref|YP_003776694.1| ribonuclease BN transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 470

 Score = 60.1 bits (144), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 120/264 (45%), Gaps = 33/264 (12%)

Query: 25  DFAPSMGAAIAYYTIFSIAPMLVIAIAV--AGMLFGHDAAQGEIVNQIRDIVGTEGAFAI 82
           D  P +  ++ + TI S+ PML IA+A+  A  LF    A  E    + +++    A  I
Sbjct: 33  DRLPQVAGSLTFTTILSLVPMLTIALALFTAFPLFSTFRASLE-AYFVENLMPKGVANTI 91

Query: 83  QGLLRSVSQPREGMIAAGISVVTLVIGATAVFSELQSALDRIWRIPVVKRKSGVWQLART 142
            G L   +     + A G   V L++ +    S ++S  ++IWR   VK+   + Q    
Sbjct: 92  LGYLNQFAAKSARISAVG--GVVLILTSVLTMSTIESVFNQIWR---VKKSRPLVQ---- 142

Query: 143 RLLSFGLILGLGFLLI-ISLVVSAALA-ALG------RWWGGWFEGWQLVLQLLNFVLSF 194
           R+L +  I+ LG LLI +S+ V++ L+ A G       W G  F           + L  
Sbjct: 143 RVLVYWAIITLGPLLIGVSISVTSYLSTATGGAVKSLPWLGASF-----------YTLVS 191

Query: 195 VVFSTL-FSMIYKFMPRVTLSWHDVWIGAVATTVLFIIGKYLIGLY-LGSTGMTSGFGAA 252
           ++FSTL ++++Y  +P  T+ W D   G +   +   I K L  +Y L     T  +G  
Sbjct: 192 LMFSTLAYTLLYSTVPNQTVDWRDALAGGLLAGIGLEIAKRLFAVYILKFPTYTMVYGTV 251

Query: 253 GSFALLLLWIYYSAQIFLLGAEFT 276
               + L+WIY    I L GA  T
Sbjct: 252 AVLPIFLVWIYMMWMITLFGALLT 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 749,505
Number of extensions: 24368
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)