BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1255.p (545 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein ... 985 0.0 gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmemb... 699 0.0 >gi|300310771|ref|YP_003774863.1| DNA translocase FtsK 1 protein [Herbaspirillum seropedicae SmR1] Length = 524 Score = 985 bits (2546), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/512 (95%), Positives = 501/512 (97%) Query: 34 PAALSYGAQEDEPHVDIPLPSLDLLDEVPESRIEIDPQQLEETGRLIEQRLREFKVPVTV 93 P +++Y DEP V+IPLPSLDLLDEVPESRIE+D +QL+ETGRLIEQRL+EFKVPVTV Sbjct: 12 PVSMAYPDYVDEPRVEIPLPSLDLLDEVPESRIEVDTEQLQETGRLIEQRLKEFKVPVTV 71 Query: 94 LGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPGKTCMGLELPNA 153 LGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPGKTCMGLELPNA Sbjct: 72 LGAEAGPVITRFEVEPAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPGKTCMGLELPNA 131 Query: 154 RRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTDLARAPHMLVAGTTGSGKSVAI 213 RRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTDLARAPHMLVAGTTGSGKSVAI Sbjct: 132 RRQMIKLSEIVHSQAYRKSASHLTIAMGKDITGTPVVTDLARAPHMLVAGTTGSGKSVAI 191 Query: 214 NAMILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVEEME 273 NAMILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAV+EME Sbjct: 192 NAMILSLLYKATPEEVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVDEME 251 Query: 274 RRYKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTLDAPEPLEKLPTIVIVIDELAD 333 RRYKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLT DAPEPLEKLPTIVIVIDELAD Sbjct: 252 RRYKKMSKLGVRNLAGYNQKLDEAAARGEKIPNPFSLTPDAPEPLEKLPTIVIVIDELAD 311 Query: 334 LMMVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKID 393 LMMVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKID Sbjct: 312 LMMVVGKKVEELIARLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKID 371 Query: 394 SRTVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEE 453 SRTVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEE Sbjct: 372 SRTVLDQMGAESLLGHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEE 431 Query: 454 ILAPPISEDTAQADMFAGGEGGDAESDPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAA 513 ILAPPISEDTAQADMFA GEGGD E+DPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAA Sbjct: 432 ILAPPISEDTAQADMFANGEGGDPEADPLYDEAVAFVLKTRRASISSVQRQLRIGYNRAA 491 Query: 514 RLVEQMETAGVLSAMSRNGSRDILVPPSGGEE 545 RLVEQMETAGVLSAMSRNGSRDILVPPSGG E Sbjct: 492 RLVEQMETAGVLSAMSRNGSRDILVPPSGGVE 523 >gi|300311228|ref|YP_003775320.1| DNA translocase FtsK2 transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 780 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/493 (72%), Positives = 408/493 (82%), Gaps = 1/493 (0%) Query: 48 VDIPLPSLDLLDEVPESRIEIDPQQLEETGRLIEQRLREFKVPVTVLGAEAGPVITRFEV 107 V LP L LLDE P S+ + + LE T RLIE++L +F V V V+ A GPVITR+E+ Sbjct: 280 VSTDLPPLSLLDEAPPSQQTVSVETLEFTSRLIEKKLSDFGVEVKVVAAYPGPVITRYEI 339 Query: 108 EPAQGVRGAQVVNLMKDLSRALGLTSIRVVETIPGKTCMGLELPNARRQMIKLSEIVHSQ 167 EPA GV+G+Q+VNL +DL+R+L LTSIRVVE I GK MGLELPN +RQ+++L+EI+ S+ Sbjct: 340 EPATGVKGSQIVNLARDLARSLSLTSIRVVEVIQGKNYMGLELPNPKRQIVRLTEILGSK 399 Query: 168 AYRKSASHLTIAMGKDITGTPVVTDLARAPHMLVAGTTGSGKSVAINAMILSLLYKATPE 227 Y S S LT+A+GKDI G PVV DLA+ PH+LVAGTTGSGKSV INA ILSLLYK+TP Sbjct: 400 VYNDSHSSLTVALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINATILSLLYKSTPR 459 Query: 228 EVRLIMIDPKMLELSIYEGIPHLLAPVVTDMREAAHALNWAVEEMERRYKKMSKLGVRNL 287 +VRLI+IDPKMLELSIYEGIPHLLAPVVTDMR+A HALNWAVEEMERRYKKMSKLGVRNL Sbjct: 460 QVRLILIDPKMLELSIYEGIPHLLAPVVTDMRQAGHALNWAVEEMERRYKKMSKLGVRNL 519 Query: 288 AGYNQKLDEAAARGEKIPNPFSLTLDAPEPLEKLPTIVIVIDELADLMMVVGKKVEELIA 347 AGYNQK+ +A RGEKIPNPFSLT DAPEPLE+L TIVI+IDELADLMMVVGKKVEELIA Sbjct: 520 AGYNQKIADAEKRGEKIPNPFSLTPDAPEPLEQLETIVIIIDELADLMMVVGKKVEELIA 579 Query: 348 RLAQKARAAGIHLILATQRPSVDVITGLIKANIPTRVAFQVSSKIDSRTVLDQMGAESLL 407 R+AQKARAAGIHLILATQRPSVDVITGLIKAN+PTR+AFQVSSKIDSRT+LDQMGAE+LL Sbjct: 580 RIAQKARAAGIHLILATQRPSVDVITGLIKANVPTRIAFQVSSKIDSRTILDQMGAETLL 639 Query: 408 GHGDMLFLPPGSGYPQRVHGAFVSDEEVHRVVEYLKSFGEPRYIEEILAPPISEDTAQAD 467 G GDML+ PPG+G P RVHGAFVSD+EVHRVVE+LKS GEP YIE IL + ED Sbjct: 640 GMGDMLYNPPGTGLPVRVHGAFVSDDEVHRVVEHLKSQGEPNYIEGILEGGVLEDADGGG 699 Query: 468 MFAGGEGGDAESDP-LYDEAVAFVLKTRRASISSVQRQLRIGYNRAARLVEQMETAGVLS 526 A G +YD+AVA VLK RRASIS VQR LRIGYNRAARL+EQME +G++S Sbjct: 700 SGAAAGGAGGGEGDEMYDQAVAVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQSGLVS 759 Query: 527 AMSRNGSRDILVP 539 M NG+R+ILVP Sbjct: 760 TMQSNGNREILVP 772 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,769,258 Number of extensions: 78950 Number of successful extensions: 395 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 391 Number of HSP's successfully gapped: 2 Length of query: 545 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 455 Effective length of database: 1,193,720 Effective search space: 543142600 Effective search space used: 543142600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)