BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1254.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310769|ref|YP_003774861.1| DNA-3-methyladenine glycosylase...   358   e-100

>gi|300310769|ref|YP_003774861.1| DNA-3-methyladenine glycosylase I
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  358 bits (918), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 169/187 (90%), Positives = 178/187 (95%)

Query: 1   MNPSPIRCGWVNLANPRYVDYHDHEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRDS 60
           M  +  RCGWVNLANPRY+DYHDHEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKR+S
Sbjct: 1   MTQTLTRCGWVNLANPRYIDYHDHEWGVPCHDETRLFEMLNLEGAQAGLSWETVLNKRES 60

Query: 61  YREAFDGWDADKIARYDERRVAQLLANPGIVRNRLKVAATIGNARAYLKLCEEVGGLDPY 120
           YR AFDGWDA+KIARYDER+VAQLLA+PGIVRNRLKVAATIGNARAYLKL EE+GGLD Y
Sbjct: 61  YRAAFDGWDAEKIARYDERKVAQLLADPGIVRNRLKVAATIGNARAYLKLREEIGGLDAY 120

Query: 121 LWGHVDGQPIVNRWASLADCPAKTPLSDAISKDLARRGFKFVGSTIIYAYLQGVGVINDH 180
           LW HVDGQ IVNRWASLA+CPAKTPLSDAISKDLARRGFKFVGSTIIYAYLQGVGVINDH
Sbjct: 121 LWAHVDGQAIVNRWASLAECPAKTPLSDAISKDLARRGFKFVGSTIIYAYLQGVGVINDH 180

Query: 181 VRDCHCH 187
           V+DCHCH
Sbjct: 181 VQDCHCH 187


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 642,004
Number of extensions: 25865
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)