BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1237.p (1435 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspi... 2395 0.0 >gi|300310753|ref|YP_003774845.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1439 Score = 2395 bits (6207), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1160/1397 (83%), Positives = 1278/1397 (91%), Gaps = 4/1397 (0%) Query: 1 MSQEHHNATPQPGRWALCWRFARGSYRRLNRASHHVLGFTLKLLLVAYFVFCALFLVLRY 60 MS+EH NA +PGRWALCWR ARGSY RLNRASHH+LGFT+KLLL YF+FCALFLVLRY Sbjct: 1 MSEEHDNAAHKPGRWALCWRVARGSYFRLNRASHHLLGFTVKLLLAGYFIFCALFLVLRY 60 Query: 61 AVLPEIGHYKPQIERLVSRQIGRAVSIDDIAASWRGLRPQLSLTNLTVHDQQGEPALRLP 120 AVLPEIGHYKPQIERLVS QIGRAVSID I ASWRGLRPQLSLTN+TVHDQQGEPAL LP Sbjct: 61 AVLPEIGHYKPQIERLVSAQIGRAVSIDVINASWRGLRPQLSLTNITVHDQQGEPALTLP 120 Query: 121 RISTTLSWSSLLVAGLRVENLSIEGADLAIRRDAAGKLYVAGIPVPAGGDGSSLDWLLSQ 180 ++STTLSWSS++VA LR+ENLSIEGADLAIRRDA GKL+VAGIPVP GGDGSSLDWLLSQ Sbjct: 121 QVSTTLSWSSVVVASLRLENLSIEGADLAIRRDAGGKLFVAGIPVPTGGDGSSLDWLLSQ 180 Query: 181 REIVIRHSKLRWDDELRAAPELVLQDVNLVLHNRWLRHRLSLRAIPPQDMAAPLDVRADF 240 REIVIRHSKLRWDDELR APELVL+DVNLVLHNRWLRHRLSLRAIPP AAPLDVRADF Sbjct: 181 REIVIRHSKLRWDDELRQAPELVLEDVNLVLHNRWLRHRLSLRAIPPTSYAAPLDVRADF 240 Query: 241 SHPAFARSSDISRWKGLLYADLRNTELAVWRAWIDYPIDIRSGRGSVRAWLTLDHAKVAN 300 SHPAFARSSDI RWKG LYADL+ T+L+VWRA+ DYPI I+SG GSVRAWL LDHAKVAN Sbjct: 241 SHPAFARSSDILRWKGTLYADLQRTDLSVWRAYFDYPIAIQSGTGSVRAWLALDHAKVAN 300 Query: 301 FTADLRLTDFNARLSRQLDPLSLKRVNGRISASETLGPNLEDGIPTFGTNGHQVTLTDFS 360 FTADL L +FNA+LSRQL+PLSLKRVNGRISASE+LG EDGIPTFG NGHQVTLTDFS Sbjct: 301 FTADLALNNFNAQLSRQLEPLSLKRVNGRISASESLGATPEDGIPTFGANGHQVTLTDFS 360 Query: 361 IETPDGFVLPPTSIAESYEPATPLKAERTSVKATYLNLLTLSQLATRLPLAPSHRKLLDD 420 IETPDGFVLPPTSIAESYEP TPLKAERTSVKATYLNL TLSQLATRLPLAPS RKLLDD Sbjct: 361 IETPDGFVLPPTSIAESYEPGTPLKAERTSVKATYLNLQTLSQLATRLPLAPSQRKLLDD 420 Query: 421 LAPRGELRDFTVQWQGSYPELSSYRVNGRFQNLGLKGLPAHVEPHRNGVRPARAQWAAFP 480 LAPRGELRDFTVQWQG+YPEL+SYRV GRF LGLKGLPAHVEP RN + RAQWA FP Sbjct: 421 LAPRGELRDFTVQWQGTYPELASYRVQGRFSGLGLKGLPAHVEPRRNAAQQVRAQWAGFP 480 Query: 481 GFSNLSGEVDATEKGGSVKVDARQLAVQLPAELFSEPTMPFDTLKLQARWQFLKDQMLQV 540 GFSN+ GE+DATEKGGSVK+D+++LA+++PAE F E +MPFD+LK+QARWQ+LKDQ LQV Sbjct: 481 GFSNIDGEIDATEKGGSVKLDSQELAIEMPAEQFVESSMPFDSLKMQARWQYLKDQTLQV 540 Query: 541 DLDQMQFTQPGVAGSLHGQHLVPLEGRSMGSVDVSGELSSFDVKAVRRYLPPHLSEPLRH 600 DL+Q+QF QPGVAGSL G+H+ PL+G+S GSVD+ GELS FDVKA+RRYLP HLSEPLRH Sbjct: 541 DLEQLQFAQPGVAGSLSGRHVQPLQGKSAGSVDLHGELSRFDVKAIRRYLPRHLSEPLRH 600 Query: 601 WLTEGLMAGTLKDVQFKLKGALADFPFHTAKPGDKPRGQFQLTGEFEGLKLNYTPGHLGR 660 WLT+GL+ G+L+DVQF LKGALADFPFHTAKPGDKP+GQFQL+G+FEGLKLNYTPGHLGR Sbjct: 601 WLTDGLVDGSLRDVQFTLKGALADFPFHTAKPGDKPKGQFQLSGDFEGLKLNYTPGHLGR 660 Query: 661 DGRDPEWPLLEEGRGRLSMDRTRLEIKADSARTLGARLGPVTARVADVDSHDAVLEIDGQ 720 DG++PEWPLLEEGRG LS+DRTRLEIKADSARTLGA+LGPVTARVADVDSH+A LEI+G Sbjct: 661 DGKEPEWPLLEEGRGHLSIDRTRLEIKADSARTLGAKLGPVTARVADVDSHEAELEIEGV 720 Query: 721 ATGPMPAFLQYVNQSPVARWTGNVMEHTTASGEARLDLKFQMPLHHAIETRAQGTFQFAN 780 A+ PM FL+YVNQSPVARWTGN+MEH++A+GEARLDLKFQMPLHHAI+TRAQG F FAN Sbjct: 721 ASAPMAVFLRYVNQSPVARWTGNLMEHSSATGEARLDLKFQMPLHHAIDTRAQGAFHFAN 780 Query: 781 NDVDLLPELPPLYRTSGKVEFNEHGFTLNGVRGQFLGDTLAISGGTQKDGSSQVRLEGAI 840 NDVDLLP+LP LYRT+GKVEFNEHGFTLNGVRGQFLGD L ISGGTQKDGSSQ+RLEGAI Sbjct: 781 NDVDLLPDLPVLYRTNGKVEFNEHGFTLNGVRGQFLGDALTISGGTQKDGSSQMRLEGAI 840 Query: 841 NIDNLRKQYPEPSLQRLLARFSGGTRYTATVQVRQHQPEVSIDSNLVGLGVDLPLPLRKG 900 N+D LRKQYPEPSLQRLLAR SG TRY ATV VRQHQPEV ++S+L GLGVDLP+PLRK Sbjct: 841 NVDMLRKQYPEPSLQRLLARLSGTTRYNATVLVRQHQPEVVVESSLAGLGVDLPVPLRKS 900 Query: 901 MQDSLPMRFDLLPLASADPLIEREEMRLALGANIAARYVRERVAGKGNDWRVASGGIGWN 960 Q+SLP+RF+LLPLASADPLIEREE++LALG++IA+RYVRERVA G WRV SGGIGWN Sbjct: 901 AQESLPLRFELLPLASADPLIEREELKLALGSSIASRYVRERVAATGAAWRVTSGGIGWN 960 Query: 961 QPAPTPASGLKLALASDSLDVDAWLALKTALTGKEAGAGGTSPS-RLGSSDVTQYLEPDS 1019 QPAP+P++GLKLALA+DSL+VD WL+LK L G ++ S RLGS D+ QYL PD Sbjct: 961 QPAPSPSAGLKLALAADSLEVDPWLSLKNELVGPAVAEDASAASTRLGSGDIAQYLAPDQ 1020 Query: 1020 ISARVGELTLMGKQLNKLVLEAAHRRNAWQINLESQQASGSVTWEDSGSGRGPGKVTARL 1079 +SARVGEL+L GK+LNKL+LEAAHRRN+WQI+LESQQ +G+VTW++SG+ RGPGKVTARL Sbjct: 1021 VSARVGELSLKGKKLNKLILEAAHRRNSWQISLESQQVAGTVTWDESGAARGPGKVTARL 1080 Query: 1080 STLIIPKSNPATDATQPTPASAVKADDNVQMPALDIRAEQFELGGKKLGRLELDASNIVT 1139 S+L+IPKS P + T AS DD VQMPALDIRAEQFELGGKKLGRLELDASN+VT Sbjct: 1081 SSLVIPKSTPTAENGAATVAS---EDDKVQMPALDIRAEQFELGGKKLGRLELDASNMVT 1137 Query: 1140 SVGREWRISRLLLANPDAQFRAAGNWLSFGSNHTSNFTYALDIEDAGKLLERFGYPGTIR 1199 SVGREWRISRLLLANPDAQFRAAGNW+SFGSNHTSNFTYALDIEDAGKLLERFGYPGT+R Sbjct: 1138 SVGREWRISRLLLANPDAQFRAAGNWMSFGSNHTSNFTYALDIEDAGKLLERFGYPGTVR 1197 Query: 1200 GGHGKLDGDLSWKAPPYAMDMASLAGQVHMDVHSGQFLKVDPGAAKLLGVLNLQALPRRL 1259 GG GKLDGDLSWKAPPYAMDMASLAGQVHMDVH+GQFLKVDPGAAKLLGVLNLQALPRRL Sbjct: 1198 GGKGKLDGDLSWKAPPYAMDMASLAGQVHMDVHAGQFLKVDPGAAKLLGVLNLQALPRRL 1257 Query: 1260 TLDFRDVFSQGFAFDTVAGTASIAKGIASTDNLKMTGVTASVLMSGSADIARETQDLHVV 1319 TLDFRDVFS+GFAFDTVAGTASI KGIASTDNLKMTGVTASVLMSGSADIARETQDLHVV Sbjct: 1258 TLDFRDVFSEGFAFDTVAGTASINKGIASTDNLKMTGVTASVLMSGSADIARETQDLHVV 1317 Query: 1320 VIPEINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVTGPWSDPIVVKQGQ 1379 VIPEINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKV+G WSDPIVVKQGQ Sbjct: 1318 VIPEINLGTASVVAMAVNPVVGVSTLLAQLFLRNPVMKSLSFEYKVSGSWSDPIVVKQGQ 1377 Query: 1380 VSPVDAERAKEVLQKGQ 1396 V+PVD +RA+E+L++G+ Sbjct: 1378 VTPVDGQRARELLEQGR 1394 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 4,702,863 Number of extensions: 209301 Number of successful extensions: 622 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 619 Number of HSP's successfully gapped: 1 Length of query: 1435 Length of database: 1,619,870 Length adjustment: 97 Effective length of query: 1338 Effective length of database: 1,160,575 Effective search space: 1552849350 Effective search space used: 1552849350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 137 (57.4 bits)