BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1236.p
         (922 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase adenyl...  1652   0.0  

>gi|300310752|ref|YP_003774844.1| glutamate-ammonia-ligase
           adenylyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 927

 Score = 1652 bits (4277), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 837/927 (90%), Positives = 867/927 (93%), Gaps = 5/927 (0%)

Query: 1   MTGGFPTFTPCPGALRLPMPV----HQVSLVDASTSRYYTRWTQADPARSALIASTAAQA 56
           M  GFP+FT C GA +  MPV    H  SLV+AS+SRYYTRWTQADPAR AL+A+ AA  
Sbjct: 1   MAAGFPSFTLCCGAFQTLMPVFSPAHHRSLVEASSSRYYTRWTQADPARPALVAAAAAAG 60

Query: 57  IDRT-IMQQRLEQDLAAGLSLPGAMRRLRNLIVCTLITRDLDGRADLAEVVATMTDFADF 115
                 +QQRLE DLA+GLSLP AMRRLRNL++CTLITRDLDGR DL EVV TMT FADF
Sbjct: 61  ALDRAFLQQRLEHDLASGLSLPAAMRRLRNLVICTLITRDLDGRGDLDEVVTTMTGFADF 120

Query: 116 AVQTHLAALMQEQVALYGTPIGEESGRPQEMIVLGMGKLGGGELNVSSDIDLIFVYPEDG 175
           AVQTHLAALMQEQ ALYG PIGEESGRPQEMIVLGMGKLGGGELNVSSDIDLIFVYPEDG
Sbjct: 121 AVQTHLAALMQEQTALYGLPIGEESGRPQEMIVLGMGKLGGGELNVSSDIDLIFVYPEDG 180

Query: 176 DTQAEAGQKSLSNHEFFVRLGKKLIGALAEITEDGFTFRVDMALRPNGNSGPLVASFNMV 235
           DT+AEAGQKSLSNHEFFVRLGKKLIGALAEITEDGFTFRVDMALRPNGNSGPLVASFNMV
Sbjct: 181 DTRAEAGQKSLSNHEFFVRLGKKLIGALAEITEDGFTFRVDMALRPNGNSGPLVASFNMV 240

Query: 236 EEYLVRQGREWERYAWTKARALTGTAEDIATLEAISRPFIFRRYLDFGSIDALRSMHGQI 295
           EEYLVRQGREWERYAWTKARALTGT EDIATLEAISRPFIFRRYLD+GSIDALRSMHGQI
Sbjct: 241 EEYLVRQGREWERYAWTKARALTGTPEDIATLEAISRPFIFRRYLDYGSIDALRSMHGQI 300

Query: 296 RAEVKRQEALHPDRSNNVKLGRGGIREIEFTSQVFQLIRGGRDPDLRDRSTRTTLRTLAA 355
           RAEVKRQEALHPDRSNNVKLGRGGIREIEFTSQVFQLIRGGRD +LRDRSTRTTLRTLAA
Sbjct: 301 RAEVKRQEALHPDRSNNVKLGRGGIREIEFTSQVFQLIRGGRDAELRDRSTRTTLRTLAA 360

Query: 356 KDLLAPEVVAQLLEAYTFLRDLEHRLQYLEDAQTHTLPVNPEDLLLVANMMGYADSPALL 415
           KDLLAPEVV QLL AYTFLR+LEHRLQYLEDAQTHTLPVNP+DLLLVA MMGY +  ALL
Sbjct: 361 KDLLAPEVVEQLLHAYTFLRNLEHRLQYLEDAQTHTLPVNPDDLLLVARMMGYEEPAALL 420

Query: 416 RELERQRAIVATQFDAIFADKQSEADSDGPTVAVSENDNLEGLTDALRLVGFPQEDIEDG 475
            ELERQRAIVA QFDAIFADKQSEAD+DGP+V+VS+NDNLEGL DALRLVGFP+ DI DG
Sbjct: 421 HELERQRAIVAAQFDAIFADKQSEADNDGPSVSVSDNDNLEGLADALRLVGFPEADIADG 480

Query: 476 ARRLHLTWQSPRMQSLPEASRNRLNTVINKCLPLLAALHYDQLPALGRLLDFLEAIARRA 535
           ARRLHLTWQSPRMQSLPEASRNRLNTVIN  LPLLAALHYDQLPALGRLLD LEAIARRA
Sbjct: 481 ARRLHLTWQSPRMQSLPEASRNRLNTVINTSLPLLAALHYDQLPALGRLLDLLEAIARRA 540

Query: 536 AYLALLTEYPYALQRLVRMIGASGWAATYLTRHPLLLDELLDDRNLKAGSDWVAFADTCR 595
           AYLALLTEYPYALQRLVRMIGASGWAATYLTRHPLLLDELLDDRNLKA SDW AFA+ CR
Sbjct: 541 AYLALLTEYPYALQRLVRMIGASGWAATYLTRHPLLLDELLDDRNLKAASDWAAFAENCR 600

Query: 596 RQLSAAEGDTERQLDILRELHHAELFRLLAQDLEGELSVEKLADELSALADVLVQVTIEA 655
           RQL+ AEGDTERQLDILRELHHAE FRLLAQDLEG+LSVEKLADELSALADVLVQVTIEA
Sbjct: 601 RQLATAEGDTERQLDILRELHHAEQFRLLAQDLEGDLSVEKLADELSALADVLVQVTIEA 660

Query: 656 VWQTIAQRHREVPRFAVIAYGKLGGKELGYASDLDVVFLYDDDDQEAPGLYAKLAQRFIT 715
           VWQT+AQRHREVP+FAVIAYGKLGGKELGYASDLDVVFLYDD+DQ+APGLYAKLAQRFIT
Sbjct: 661 VWQTVAQRHREVPQFAVIAYGKLGGKELGYASDLDVVFLYDDEDQDAPGLYAKLAQRFIT 720

Query: 716 WMTSHTPAGTLFDIDIALRPDGASGLLVSPVSSFEKYQLNAAWIWEHQALTRARFCAGDT 775
           WMTSHTPAGTLFDIDIALRPDGASGLLVSP+SSFEKYQLNAAWIWEHQALTRARFCAGDT
Sbjct: 721 WMTSHTPAGTLFDIDIALRPDGASGLLVSPLSSFEKYQLNAAWIWEHQALTRARFCAGDT 780

Query: 776 AIGERFEALRERVLRQPRDVQKLEEEVLSMRGRMREAHPNRSQMFDLKHDEGGMIDIEFM 835
           AIGERFEALRERVLRQPRD  +LEEEVLSMR RMREAHPNRS MFDLKHDEGGMIDIEFM
Sbjct: 781 AIGERFEALRERVLRQPRDPARLEEEVLSMRRRMREAHPNRSTMFDLKHDEGGMIDIEFM 840

Query: 836 VQYLVLRHACDHPQLTGDIGNIALLKLAAQLGLIDDLLAAEAANAYRLFRKLQHQIRLQG 895
           VQYLVLRHA DHPQLTGDIGNIALLKLA QLGLID LLA EAANAYRLFRKLQHQIRLQG
Sbjct: 841 VQYLVLRHASDHPQLTGDIGNIALLKLAGQLGLIDALLADEAANAYRLFRKLQHQIRLQG 900

Query: 896 SERAHIDAIRVEHERACVIRLWQQVFG 922
           SERAHIDAIRVEHERACVIRLWQQVFG
Sbjct: 901 SERAHIDAIRVEHERACVIRLWQQVFG 927


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,761,403
Number of extensions: 112820
Number of successful extensions: 351
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 1
Length of query: 922
Length of database: 1,619,870
Length adjustment: 94
Effective length of query: 828
Effective length of database: 1,174,780
Effective search space: 972717840
Effective search space used: 972717840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)