BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1234.p
         (169 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310750|ref|YP_003774842.1| hypothetical protein Hsero_1418...   235   1e-63

>gi|300310750|ref|YP_003774842.1| hypothetical protein Hsero_1418
           [Herbaspirillum seropedicae SmR1]
          Length = 176

 Score =  235 bits (600), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 151/176 (85%), Positives = 157/176 (89%), Gaps = 7/176 (3%)

Query: 1   MSASSSQAPRLWANLALICAVSLSLSACDYISSFSKPKQTPEEAKAEGIALGAGCRQAGQ 60
           MSASSSQA RL ANLALI AVS SLSACDYISSFSKPKQTPEEAKAEGIALGAGCRQAGQ
Sbjct: 1   MSASSSQARRLLANLALISAVSFSLSACDYISSFSKPKQTPEEAKAEGIALGAGCRQAGQ 60

Query: 61  SLEDCYQRNPDALKAGIFAGWKDMHEYMAAKGIQTVTPPAPAADATKDDAKGKDG----- 115
           SLEDCYQRNPDALKAGIFAGWKDMHEYMAAKGIQTVTPP P ADA KDDAKGKDG     
Sbjct: 61  SLEDCYQRNPDALKAGIFAGWKDMHEYMAAKGIQTVTPPTPPADAAKDDAKGKDGKDSKD 120

Query: 116 --KDKDAKDSDRSSRSRDRDSSRDNARSRDRESSSSSRDASSDRRASRDEKTPPKY 169
               KD+KDSDRS+R+R+RDSSRD+ARSRDRESSSS   +SSDRRASRDEKTPPKY
Sbjct: 121 AKDSKDSKDSDRSNRARERDSSRDSARSRDRESSSSRDSSSSDRRASRDEKTPPKY 176


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.308    0.122    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 326,689
Number of extensions: 10089
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 90
Effective length of database: 1,245,805
Effective search space: 112122450
Effective search space used: 112122450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 127 (53.5 bits)