BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1227.p (278 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 98 8e-22 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 94 1e-20 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 93 2e-20 gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate A... 90 3e-19 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 88 1e-18 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 97.8 bits (242), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 16/293 (5%) Query: 1 MNETIAPAV---AVAPQPATAAPASAAPR--KCAALG------RLLPIVGPIVLFVIWDL 49 MN+ + P A+ P P+ A A P K + G + I IV+ +W L Sbjct: 1 MNDQVQPLPLLNALRPDPSAQAQADQPPPLVKMRSFGIAEGSTARISIAAGIVILALWWL 60 Query: 50 VVRAGWIKAILLPPPEATLMA----MFKGLAGGPLLLDFSVTVVRTLEAFAIAAVLGLPI 105 + + GW+ + LP P L G A L +++R L A IA +LG+P+ Sbjct: 61 IAQTGWVPHLFLPTPAEVLKVAQSIWEDGYANATLAEHVGASLLRILTAGVIAVLLGIPV 120 Query: 106 GVLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIFGVSDINKVAIAAFGAFLIVLFNS 165 G+L+G N ++ I+F+ P A +PL ++ G+ + +K+ + F V+ ++ Sbjct: 121 GLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSA 180 Query: 166 AYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASFVGLRSAVSMALVIVIVAEMFI 225 GV + ++RV AA +GA+RW++ +V++ +L G+R A+ + ++ AE+ I Sbjct: 181 QAGVRSLPQERVNAALSLGATRWQLLTEVVLPSALPEILTGIRIALGVGWSTLVAAEL-I 239 Query: 226 GSENGLGHRIIDTQQVLNVREMYAAILSAGALGYALNVVFIVIEKRIVHWSGR 278 S G+G+ I+ L ++ I +A + ++E+ +V W G+ Sbjct: 240 ASNRGIGYMIMSASHFLATDAVFVGIALIATCAFAFSYGMRLLERALVPWKGK 292 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 45 VIWDLVVRAGWIKAILLPPPEATLMAMFKGLAGGPLLLDFSVTVVRTLEAFAIAAVLGLP 104 V W++ +AGW+ + +LP P A L A ++ A G L +V+ R FA+ A Sbjct: 45 VWWEVAAQAGWLSSRILPEPLAVLKAAWELSASGELWRHLAVSSGRAASGFAVGAG---- 100 Query: 105 IGVLLGSNERAYRSVEFLID----FFRSTPSSALIPLFLLIFGVSDINKVAIAAFGAFLI 160 +G++LG + RS E L+D R+ P+ ALIPL +L FG+ + K+ + + G F Sbjct: 101 LGLILGLLSGSLRSAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFP 160 Query: 161 VLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASFVGLRSAVSMALVIVIV 220 V N+ +G+ + + + AK G S W ++ DV++ +L A VGLR A+ + V++IV Sbjct: 161 VYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIV 220 Query: 221 AEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAGALGYALNVVFIVIEKRIVHWS 276 AE I ++ G+G+ ++ ++ L + IL LG + +E+ + W Sbjct: 221 AET-ISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARWLERFWLRWH 275 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/254 (30%), Positives = 131/254 (51%), Gaps = 18/254 (7%) Query: 40 PIVLFVIWDLVVRAGWIKAILLPPPEATL---------MAMFKGLAG--------GPLLL 82 PI++ +W+ RAGWI +LP P A L + + AG G L++ Sbjct: 16 PIIVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAFSGELVM 75 Query: 83 DFSVTVVRTLEAFAIAAVLGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIF 142 D ++ R + F I A L LP+G+L+GS++R Y + + R P A IPL +L F Sbjct: 76 DAIGSLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWF 135 Query: 143 GVSDINKVAIAAFGAFLIVLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQA 202 G+ + + + + GAF VL N+ GV + AA+ +GAS+ +F V++ ++ Sbjct: 136 GLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPY 195 Query: 203 SFVGLRSAVSMALVIVIVAEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAGALGYALN 262 G+R + A ++VIVAEM I NGLG RI++ ++ ++ A +++ G LG A++ Sbjct: 196 ILSGVRIGIGTAFIVVIVAEM-IAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAID 254 Query: 263 VVFIVIEKRIVHWS 276 + + ++ W Sbjct: 255 LGMSRLNNYMLRWH 268 >gi|300312684|ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 284 Score = 89.7 bits (221), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/279 (27%), Positives = 132/279 (47%), Gaps = 8/279 (2%) Query: 4 TIAPAVAVAPQPATAAPASAAPRKCAALGRLLPIVGPIVLFVI---WDLVVRAGWIKAIL 60 T A A A AA + A RK A +L+ + +L ++ W++ R GWI Sbjct: 2 TQAQASQSAATMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPFF 61 Query: 61 LPPPEATLMAMF----KGLAGGPLLLDFSVTVVRTLEAFAIAAVLGLPIGVLLGSNERAY 116 P + ++ +G + GPL VT+ T+ F I +V G+ G++LG N+ Sbjct: 62 FSQPSLIVAQIYDWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLLS 121 Query: 117 RSVEFLIDFFRSTPSSALIPLFLLIFGVSDINKVAIAAFGAFLIVLFNSAYGVLNARKQR 176 I S P L +F++ FG+ +KVA+A F +V N+ GV A + Sbjct: 122 DVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRYM 181 Query: 177 VMAAKVMGASRWRIFCDVLIWESLQASFVGLRSAVSMALVIVIVAEMFIGSENGLGHRII 236 + A+++GASR ++ V+I +L L + ALV +V E F+GS+ G+G I Sbjct: 182 IANAQILGASRRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGE-FLGSKQGIGLLIS 240 Query: 237 DTQQVLNVREMYAAILSAGALGYALNVVFIVIEKRIVHW 275 Q N ++AA++ + A + + +E+R++ W Sbjct: 241 TAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKW 279 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/238 (26%), Positives = 115/238 (48%), Gaps = 3/238 (1%) Query: 41 IVLFVIWDLVVRAGWIKAILLPPPEATLMAMFKGLAGGPLLLDFSVTVVRTLEAFAIAAV 100 +V+ +W + + + P P + L AM GP+ T T+ FAIA V Sbjct: 23 LVILGVWQFICSVWQVSDFIFPSPGSILQAMVD--YAGPITEHALSTFWVTMVGFAIAVV 80 Query: 101 LGLPIGVLLGSNERAYRSVEFLIDFFRSTPSSALIPLFLLIFGVSDINKVAIAAFGAFLI 160 +G+ +G ++GS+ Y + L+ F + P +A +P+ ++ FG+ + A +F Sbjct: 81 VGVTLGFVIGSSPMLYAAAYPLMTAFNALPKAAFVPVLVVWFGIGAGPAILTAFLISFFP 140 Query: 161 VLFNSAYGVLNARKQRVMAAKVMGASRWRIFCDVLIWESLQASFVGLRSAVSMALVIVIV 220 ++ N A G+ + +V+GA R I V + S+ F L+ A+++A V V Sbjct: 141 IMVNIATGLATLEPELEDVLRVLGARRMDILLKVGLPRSMPYFFASLKVAITLAFVGSTV 200 Query: 221 AEMFIGSENGLGHRIIDTQQVLNVREMYAAILSAGALGYALNVVFIVIEKRIVHWSGR 278 +EM S G+G+ ++ + + +A ++ GA+ A+ +F +IEKR W+ R Sbjct: 201 SEM-NASNQGIGYLLVSAGSSMKMPLAFAGLVVIGAMAMAMYELFAIIEKRTTGWAHR 257 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.141 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 758,423 Number of extensions: 30198 Number of successful extensions: 219 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 14 Length of query: 278 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 194 Effective length of database: 1,222,130 Effective search space: 237093220 Effective search space used: 237093220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)