BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1226.p (285 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 153 2e-38 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 147 1e-36 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 146 2e-36 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 145 4e-36 gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [H... 140 1e-34 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 130/215 (60%), Gaps = 8/215 (3%) Query: 25 HITIRGLTKYFAGWP----LYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAG 80 I I+G+ K F ++ +LDIP Q V + GP+GCGKSTL+N IAG +G Sbjct: 9 RIRIQGVHKVFKTDDREVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSSG 68 Query: 81 QILFDGKSLAQT--KIGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKHRVDELVA 138 QIL D K +++ G VFQ Y ALFPW+ N+A+ L+++G KAEI RV +L+ Sbjct: 69 QILTDDKVVSEPGPDRGMVFQEY--ALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLD 126 Query: 139 SFDVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQV 198 + R+P +LSGG +Q +I R LA ++ +DEPF ALD ++++L ++ Sbjct: 127 KLGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRI 186 Query: 199 FLQTGTTMVLVSHDLEEAVYLADQILLLTKRPTAV 233 + + T+V V+H +EEA+YLAD+I+++T RP V Sbjct: 187 WDEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTV 221 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 78/212 (36%), Positives = 131/212 (61%), Gaps = 11/212 (5%) Query: 26 ITIRGLTKYFAGWPLYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQILFD 85 I + + K F + + L+ P ++ ++ GP+GCGK+TL+ +IAGL D+GQ+L D Sbjct: 3 IEVHHIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLD 62 Query: 86 G-----KSLAQTKIGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSK----AEIKHRVDEL 136 G + + + ++G+VFQ+Y ALF + +NIA+ L+++ +S+ A I+ +V L Sbjct: 63 GEDASARHVRERQVGFVFQHY--ALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRL 120 Query: 137 VASFDVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQ 196 + + + RYP +LSGGQ+Q ++ RALA P VL LDEPF ALD ++ +R L+ Sbjct: 121 LELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLR 180 Query: 197 QVFLQTGTTMVLVSHDLEEAVYLADQILLLTK 228 ++ + T + V+HD EEA+ +ADQ++L+ K Sbjct: 181 RLHDELHVTSIFVTHDQEEALEVADQVVLMNK 212 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 146 bits (369), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/212 (36%), Positives = 122/212 (57%), Gaps = 9/212 (4%) Query: 26 ITIRGLTKYFAGWP-----LYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAG 80 + + + YF+G + LDIP V G +GCGKSTL+N +AG +P+ G Sbjct: 2 LKVENASVYFSGRDKQRVHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEG 61 Query: 81 QILFDGKSLAQ--TKIGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKHRVDELVA 138 +I DG+ ++ + G VFQ +D+L PW DN+A LK G SK++ + R EL+ Sbjct: 62 RISLDGQPVSGPGAERGVVFQ--KDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLR 119 Query: 139 SFDVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQV 198 ++ PYELSGG +Q + RALAP P++L +DEPF ALD ++E L V Sbjct: 120 LVGLQDFARAAPYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSV 179 Query: 199 FLQTGTTMVLVSHDLEEAVYLADQILLLTKRP 230 + +TG + ++H +EEA++L ++++++ RP Sbjct: 180 WARTGKQVFFITHSIEEALFLGTEVIVMSPRP 211 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 145 bits (365), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 80/212 (37%), Positives = 126/212 (59%), Gaps = 4/212 (1%) Query: 23 GTHITIRGLTKYFAGWPLYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQI 82 G+ ++++ + + DLDI + V + GP+GCGKSTL+N IAG + +G+I Sbjct: 4 GSSVSLKRVGLTIGSNDIMAGIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQDV-SGEI 62 Query: 83 LFDGKSLAQTKI--GYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKHRVDELVASF 140 DGK + + G VFQ+ +ALFPWL +N+ Y LKL G + AE + + V+ Sbjct: 63 SVDGKRVKGPGLDRGVVFQSS-EALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLV 121 Query: 141 DVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQVFL 200 +K + ++P ELSGG +Q A I R L P V+ +DEPF ALD + ++ +L +++ Sbjct: 122 GLKHAIDKFPAELSGGMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWK 181 Query: 201 QTGTTMVLVSHDLEEAVYLADQILLLTKRPTA 232 TG T+V V+HD+ EA+ LAD+++ +T P A Sbjct: 182 STGCTIVFVTHDIWEAILLADRVVTMTAGPRA 213 >gi|300312634|ref|YP_003776726.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 76/206 (36%), Positives = 118/206 (57%), Gaps = 7/206 (3%) Query: 26 ITIRGLTKYFAGWPLYENFDLDIPKQQIVSVFGPNGCGKSTLINMIAGLIPIDAGQILFD 85 + IR + K F + D+DI + + GP+GCGKSTL+ M+AGL I G+IL Sbjct: 4 VQIRAVKKQFGSTQIIRGVDIDIADGEFTVLVGPSGCGKSTLLRMLAGLEEITGGEILIG 63 Query: 86 GKSLAQTK-----IGYVFQNYRDALFPWLRTIDNIAYPLKLEGKSKAEIKHRVDELVASF 140 G + + I VFQNY AL+P + DN+A+ L L K KA + RV + Sbjct: 64 GTVVNNVQPKDRDIAMVFQNY--ALYPHMTVRDNMAFSLTLAKKDKAFVDERVKKAADIL 121 Query: 141 DVKFDLMRYPYELSGGQQQTASIMRALAPGPEVLFLDEPFSALDFEMTLFIREKLQQVFL 200 + L RYP +LSGGQ+Q ++ RA+ P+V DEP S LD ++ + +R +++++ Sbjct: 122 GLNQLLDRYPRQLSGGQRQRVAMGRAIVRDPQVFLFDEPLSNLDAKLRVQMRTEIKELHQ 181 Query: 201 QTGTTMVLVSHDLEEAVYLADQILLL 226 + TT + V+HD EA+ +ADQI+++ Sbjct: 182 RLKTTSIYVTHDQIEAMTMADQIVVM 207 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 895,414 Number of extensions: 36496 Number of successful extensions: 480 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 308 Number of HSP's successfully gapped: 137 Length of query: 285 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 201 Effective length of database: 1,222,130 Effective search space: 245648130 Effective search space used: 245648130 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)