BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1225.p
         (365 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310744|ref|YP_003774836.1| ABC transporter periplasmic/sur...   742   0.0  
gi|300313552|ref|YP_003777644.1| ABC transporter periplasmic/sur...   207   1e-54

>gi|300310744|ref|YP_003774836.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 365

 Score =  742 bits (1915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/365 (98%), Positives = 364/365 (99%)

Query: 1   MKNRRDFLKLSGAAALGAAFPLELLAAGPLTVGFIYVGARDDFGYNQSHAQAAAVIKKLP 60
           MKNRRDFLKLSGAAALGAAFPLELLAAGPLTVGFIYVGARDDFGYNQSHAQAAAVIKK+P
Sbjct: 1   MKNRRDFLKLSGAAALGAAFPLELLAAGPLTVGFIYVGARDDFGYNQSHAQAAAVIKKMP 60

Query: 61  GVKVIEEEKVPETVAVQKTMEAMIQQDGATLLFPTSFGYFDPHVLKIAEKYPKVRIAHCG 120
           GVKVIEEEKVPETVAVQKTMEAMIQQDGATLLFPTSFGYFDPHVLKIAEKYPKVRIAHCG
Sbjct: 61  GVKVIEEEKVPETVAVQKTMEAMIQQDGATLLFPTSFGYFDPHVLKIAEKYPKVRIAHCG 120

Query: 121 GLWTAGKHPMNVGSFFGYIEECEYLSGVVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLG 180
           GLWTAGKHPMNVGS+FGYIEECEYLSGVVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLG
Sbjct: 121 GLWTAGKHPMNVGSYFGYIEECEYLSGVVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLG 180

Query: 181 AQSVDPSITCHVIFTGDWSLPVKEAEAANSLIDQGCDVITCHVDGPKVIVETAEKRGIMT 240
           AQSVDP+ITCHVIFTGDWSLPVKEAEAANSLIDQGCDVITCHVDGPKVIVETAEKRG+MT
Sbjct: 181 AQSVDPAITCHVIFTGDWSLPVKEAEAANSLIDQGCDVITCHVDGPKVIVETAEKRGVMT 240

Query: 241 TGYHASQAALAPKGYLTGAEWNWATPYTAIVKATLEGKPMINFLRGGLKDDFVKMSPYGA 300
           TGYHASQA+LAPKGYLTGAEWNWATPYT IVKATLEGKPMINFLRGGLKD+FVKMSPYGA
Sbjct: 241 TGYHASQASLAPKGYLTGAEWNWATPYTEIVKATLEGKPMINFLRGGLKDNFVKMSPYGA 300

Query: 301 AVSAPAKKKADEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTDVVLEKMNYLVAG 360
           AVSAPAKKKADEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTDVVLEKMNYLVAG
Sbjct: 301 AVSAPAKKKADEIKAQMLAGKFQIFKGPIKDNKGNTVIPAGTTQVQTDVVLEKMNYLVAG 360

Query: 361 VVGQV 365
           VVGQV
Sbjct: 361 VVGQV 365


>gi|300313552|ref|YP_003777644.1| ABC transporter
           periplasmic/surface lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 379

 Score =  207 bits (527), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/339 (36%), Positives = 191/339 (56%), Gaps = 10/339 (2%)

Query: 29  PLTVGFIYVGARDDFGYNQSHAQAAAVIKKLPG--VKVIEEEKVPETVAVQKTMEAMIQQ 86
           PL V F+Y+G   D G+  +H +    +++  G  VK    E +PE+ A  + +   +  
Sbjct: 47  PLKVAFVYIGPVGDAGWTFAHDKGRKAVEEKFGDKVKTTFVENIPESAADAERVFRQLAT 106

Query: 87  DGATLLFPTSFGYFDPHVLKIAEKYPKVRIAHCGGLWTAGKHPMNVGSFFGYIEECEYLS 146
           DG  L+F T+FGY +  +LK+A+++P V+  H  G  TA     N+  +     E  YL+
Sbjct: 107 DGNKLIFGTTFGYMEA-MLKVAKEFPDVKFEHATGFKTAD----NLAQYDVRTYEGAYLA 161

Query: 147 GVVAGYMSKSKKLAFIAAKPIPQVLRNINAFTLGAQSVDPSITCHVIFTGDWSLPVKEAE 206
           GVVAG MSKS KL  +A+ PIP+V+RNI++FTLGA+SV+P  T  V++   W  P KE E
Sbjct: 162 GVVAGKMSKSGKLGVVASVPIPEVIRNIDSFTLGARSVNPKATTAVVWVNKWFDPGKERE 221

Query: 207 AANSLIDQGCDVITCHVDGPKVIVETAEKRGIMTTGYHASQAALAPKGYLTGAEWNWATP 266
           AA +LI QG DV+  + D   V V+TA+++G+   G+ +   +  PK +L  +  NW   
Sbjct: 222 AATTLIGQGVDVLMQNTDSAAV-VQTAQEKGVYAFGWDSDMTSFGPKAHLAASVINWGVY 280

Query: 267 YTAIVKATLEGKPMINFLRGGLKDDFVKMSPYGAAVSAPAKKKADEIKAQMLAGKFQIFK 326
           YTA V+A L+G    +    GLK++ + ++ +   + A  K   +E K  ++ G   I+K
Sbjct: 281 YTARVQAVLDGSWKSSTSWIGLKENGIDLAAFNPELPADVKTLVEERKKGIVDGSAPIWK 340

Query: 327 GPIKDNKGNTVIPAGTTQVQTDVVLEKMNYLVAGVVGQV 365
           GPIKDN G  V+  G   V  D  L  + + V GV G+V
Sbjct: 341 GPIKDNAGKEVL--GKDAVADDGFLHGIKFYVEGVDGKV 377


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,076,851
Number of extensions: 44169
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 2
Length of query: 365
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 279
Effective length of database: 1,212,660
Effective search space: 338332140
Effective search space used: 338332140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)