BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1221.p (522 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbasp... 942 0.0 gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbasp... 285 9e-78 gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [H... 234 2e-62 gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [H... 223 3e-59 gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase... 223 4e-59 >gi|300310741|ref|YP_003774833.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 522 Score = 942 bits (2435), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/522 (92%), Positives = 499/522 (95%) Query: 1 MHALELEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 MHALELEI+NAGKSFGSFRALDEVSLK+RAGTIHALLGENGAGKSTLVKGLVGYSPLDQG Sbjct: 1 MHALELEIINAGKSFGSFRALDEVSLKIRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 Query: 61 SILADRREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWGSERAV 120 SILADRREVDIRSAR+P+QLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRW SERAV Sbjct: 61 SILADRREVDIRSARVPNQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWSSERAV 120 Query: 121 LEEFMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL 180 LEEFMA+MPFKL+ ER VSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL Sbjct: 121 LEEFMAKMPFKLSPERTVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVL 180 Query: 181 GLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAETSPDALAHWMMGH 240 GLMHALTRQQELTVLMITHKF+EVSAYADDVTVLRKGRLV SA+VAETSPD LAHWMMG Sbjct: 181 GLMHALTRQQELTVLMITHKFHEVSAYADDVTVLRKGRLVGSARVAETSPDMLAHWMMGQ 240 Query: 241 AREEKLAVARAAVPPQAAIGLEVKDLTVNNDRGVAAVRALSLQVKHGEIVGLAGISGNGQ 300 AR EK VAR AVP QA++GLEV+DLTVNNDRGVAAVRALSLQV+ GEIVGLAGISGNGQ Sbjct: 241 ARAEKAQVARPAVPVQASVGLEVRDLTVNNDRGVAAVRALSLQVRRGEIVGLAGISGNGQ 300 Query: 301 KELVEALLGQRRHLLGQIRVEGAPYAATREEMRRLRVFALPEEPLRNACIPGMSVAENMA 360 KELVEALLGQRR LLG+IRVEGAPYAATREEMRRLRVFALPEEPLRNACI GMSVAENMA Sbjct: 301 KELVEALLGQRRLLLGEIRVEGAPYAATREEMRRLRVFALPEEPLRNACIAGMSVAENMA 360 Query: 361 LRHFDVAPFKRRGWRIDRGAMKRQAQALIAAFNVKPPVPERPIGTLSGGNVQRAVLAREL 420 LR+FDVAPFKR GWRIDR AMKRQAQALI+AFNVKPPVPERPIGTLSGGNVQRAVLAREL Sbjct: 361 LRNFDVAPFKRGGWRIDRSAMKRQAQALISAFNVKPPVPERPIGTLSGGNVQRAVLAREL 420 Query: 421 GEEDLDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI 480 GE+ DGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI Sbjct: 421 GEDGQDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRI 480 Query: 481 LVMTEGRIVHVAQDVATQGADRAALGRWMAGHHDQPAHAEAA 522 LVMTEGRIVHVAQDVA +GADRAALGRWMAGH Q HAEAA Sbjct: 481 LVMTEGRIVHVAQDVAKEGADRAALGRWMAGHAQQSTHAEAA 522 >gi|300313549|ref|YP_003777641.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 285 bits (728), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 193/536 (36%), Positives = 289/536 (53%), Gaps = 56/536 (10%) Query: 4 LELEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSIL 63 L LEI + K++ A D+VSL V G IHA+LGENGAGKSTL+K + G D G I Sbjct: 6 LRLEISHVRKAYPGVLANDDVSLAVAPGEIHAVLGENGAGKSTLMKIIFGAVKPDAGEIR 65 Query: 64 ADRREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLL---ARGDLP---WRIRWGSE 117 + V I + ++ +LGI MV+QHF+L +LTV EN+ L A+ DL RI E Sbjct: 66 WNGEAVQIANPQVARKLGIAMVFQHFSLFDTLTVTENIALGLDAKTDLKELAERITRTGE 125 Query: 118 RAVLEEFMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEAD 177 + LE L +R V +LS GE+Q++EI++ L + LILDEPTSVLTPQ + Sbjct: 126 KYGLE---------LEPQRHVHTLSVGERQRVEIVRALLTEPQLLILDEPTSVLTPQAVE 176 Query: 178 EVLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAETSPDALAHWM 237 ++ + L + ++L I+HK +E+ A TV+R GR+ + S +L+ M Sbjct: 177 KLFVTLRRLA-DEGCSILYISHKLDEIRALCHSATVMRGGRVTGNCDPRNESSASLSRMM 235 Query: 238 MGHA--------------REEKLAVARAAVPPQAAIGLEVKDLTVNNDRGVAAVRALSLQ 283 +G E KL V R ++P E+KD + + Sbjct: 236 IGDELVRLQRERNPESMRNERKLHVNRLSLPKAHLFATELKD--------------IECE 281 Query: 284 VKHGEIVGLAGISGNGQKELVEALLGQRRHLLGQIRVEGAPYAA--TREEMRRLRVFALP 341 V+ GEIVG+AG+SGNGQ+EL+ AL G+ + + + G+ + R + +P Sbjct: 282 VRAGEIVGIAGVSGNGQQELLAALSGEDQRAAPHMIMLGSKAVGDLSPNPRRAAGLGLVP 341 Query: 342 EEPLRNACIPGMSVAENMALRHFDVAPFKRRGWRIDRGAMKRQAQALIAAFNVKPPVPER 401 EE L +P +S+ NM L H AP+ +RG ID G +R A ++I F VK P+ Sbjct: 342 EERLGRGAVPTLSLTANMLLSH-QKAPYVKRGM-IDFGFTRRAAASIIERFKVKAAGPDA 399 Query: 402 PIGTLSGGNVQRAVLARELGEEDLDGAANVLIVANPVFGLDFASVADIHARLLQARARGA 461 P +LSGGN+Q+ ++ RE ++ V +VA P +G+D + A IH +L+ + G Sbjct: 400 PAKSLSGGNLQKFIVGRE-----MERKPAVFVVAQPTWGVDVGAAAQIHGEILKLKQEGC 454 Query: 462 AVLLVSEDLDELLELSDRILVMTEGRIVHVAQDVATQGADRAALGRWMAGHHDQPA 517 AVL++SE+LDEL L DR+ V+ +GR+ + + + A R +G WM+G D+PA Sbjct: 455 AVLVISEELDELFALCDRLHVIAKGRL---SPSIPIEQATREQVGVWMSGLWDEPA 507 >gi|300310396|ref|YP_003774488.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 506 Score = 234 bits (596), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 167/503 (33%), Positives = 257/503 (51%), Gaps = 37/503 (7%) Query: 1 MHALELEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQG 60 M A L++ K+FG L V L+VRAG +HALLGENGAGKSTL+K L G D G Sbjct: 1 MEAAMLQLTGIKKNFGPVTVLRGVDLEVRAGEVHALLGENGAGKSTLMKILCGIVRPDAG 60 Query: 61 SILADRREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWG-SERA 119 I D + S R G+G+V+Q F+L P L +N+ LAR R RWG +RA Sbjct: 61 EIRIDGQPCRFDSYRAAIAGGVGVVFQEFSLIPYLDAVDNMFLAR---ELRSRWGWLQRA 117 Query: 120 VL----EEFMARMPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQE 175 + +E + ++ + + V LS ++Q +EI K L L R L+LDEPT+ LTP E Sbjct: 118 AMRRRAQEIIGQLGVAIPLDVPVCKLSVAQQQFVEIAKALALDARILVLDEPTATLTPAE 177 Query: 176 ADEVLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAETSPDALAH 235 + + +M +L R Q + ++ I+H E+ D +TVLR G VA+ AE L Sbjct: 178 VEHLFAVMRSL-RAQGVAIIFISHHLEEIFEICDRITVLRDGAYVATCATAEVDQARLVE 236 Query: 236 WMMGHAREEKLAVARAAVPPQAAIG--------LEVKDLTVNNDRGVAAVRALSLQVKHG 287 M+G E PP+ A G LEV L + V+ Q++ G Sbjct: 237 MMVGRRIEN-------CFPPKPAKGGEGEGEVVLEVHALQLRRQAPVS-----QFQLRRG 284 Query: 288 EIVGLAGISGNGQKELVEALLGQRRHLLGQIRVEGAPY-AATREEMRRLRVFALPEEPLR 346 EI+G AG+ G+G+ E V A+LG L ++ + G P A + + + LPE Sbjct: 285 EILGFAGLVGSGRTETVLAMLGAHAALSCKLSMHGVPLRFADPAQALQAGIGLLPESRKE 344 Query: 347 NACIPGMSVAENMALRHFDVAPFKRRGWRIDRGAMKRQAQALIAAFNVKPPVPERPIGTL 406 I S+ N++L ++ ++ G +DR ++ +A + VK P + + TL Sbjct: 345 QGLITSFSILHNVSLNNY--GKYRLGGLFLDRRREQQATEAAMQRVRVKAPGAQVRVDTL 402 Query: 407 SGGNVQRAVLARELGEEDLDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLV 466 SGGN Q+ V+AR ++ A VLI P G+D + ++I+ + + A+G ++L++ Sbjct: 403 SGGNQQKVVIARW-----INHAMKVLIFDEPTRGIDVGAKSEIYQLMREFTAQGYSILMI 457 Query: 467 SEDLDELLELSDRILVMTEGRIV 489 S +L E++ ++DR+ V G IV Sbjct: 458 SSELPEVVGMADRVCVFRGGGIV 480 >gi|300310063|ref|YP_003774155.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 521 Score = 223 bits (568), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 168/486 (34%), Positives = 253/486 (52%), Gaps = 28/486 (5%) Query: 13 KSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLDQGSILADRREVDIR 72 KSFG+ AL ++ L +R G IHAL+GENGAGKSTL+K L G DQG IL D R V +R Sbjct: 14 KSFGATLALSDMHLTIRPGEIHALMGENGAGKSTLMKVLSGVHAPDQGEILLDGRPVALR 73 Query: 73 SARLPHQLGIGMVYQHFTLAPSLTVAENLLLARGDLPWRIRWG-----SERAVLEEFMAR 127 GI ++YQ +AP+++VA N+ + R R G + R+ + + + Sbjct: 74 DPGASRAAGINLIYQELAVAPNISVAANVFMGS---ELRTRLGLIDHAAMRSRTDAVLRQ 130 Query: 128 MPFKLATERLVSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQEADEVLGLMHALT 187 + L LS E+Q++EI + L R R +I+DEPT+ L+ +E +++ ++ L Sbjct: 131 LGAGFGASDLAGRLSIAEQQQVEIARALVHRSRIVIMDEPTAALSERETEQLFNVVRRL- 189 Query: 188 RQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAETSPDALAHWMMGHAREEKLA 247 R + L ++ I+H+ EV A AD VTVLR G V E + + M+G + E Sbjct: 190 RDEGLAIIYISHRMAEVYALADRVTVLRDGSFVGELVRDEIDSERIVQMMVGRSLSEFYQ 249 Query: 248 VARAAVPPQAAIGLEVKDLTVNNDRGVAA--VRALSLQVKHGEIVGLAGISGNGQKELVE 305 R A P AA + TV R +A +R S V+ GE++G AG+ G G+ EL Sbjct: 250 HQRIA-PADAA-----QLPTVMQVRALAGGKIRPASFDVRAGEVLGFAGLVGAGRTELAR 303 Query: 306 ALLGQRRHLLGQIRVEGAP--YAATREEMRRLRVFALPEEPLRNACIPGMSVAENMALRH 363 L G G I +EG P R M R + +PE+ M+VA N + Sbjct: 304 LLFGADPRSGGDILLEGRPVHIDQPRAAM-RAGIAYVPEDRKGQGLFLQMAVAANATM-- 360 Query: 364 FDVAPFKRRGWRIDRGAMKRQAQALIAAFNVKPPVPERPIGTLSGGNVQRAVLARELGEE 423 +VA R + ++ A+A I NVK PE P+G LSGGN Q+ +LAR Sbjct: 361 -NVASRHTRLGLVRSRSLGGVARAAIQRLNVKVAHPETPVGKLSGGNQQKVLLARW---- 415 Query: 424 DLDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLLVSEDLDELLELSDRILVM 483 L+ A VLI+ P G+D + ++I+ + + ++G AV+++S +L E++ + DR+LVM Sbjct: 416 -LEIAPKVLILDEPTRGVDIYAKSEIYQLVHRLASQGVAVVVISSELPEVIGICDRVLVM 474 Query: 484 TEGRIV 489 EG I Sbjct: 475 REGMIT 480 >gi|300313777|ref|YP_003777869.1| D-xylose ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 518 Score = 223 bits (567), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 177/503 (35%), Positives = 265/503 (52%), Gaps = 33/503 (6%) Query: 1 MHALELEILNAGKSFGSFRALDEVSLKVRAGTIHALLGENGAGKSTLVKGLVGYSPLD-- 58 M LE+ KSFG RAL+ + +K+R G L GENGAGKSTL+K L G P Sbjct: 1 MSEYLLEMKGIVKSFGGVRALNGIDIKIRPGECVGLCGENGAGKSTLMKILSGVYPHGTW 60 Query: 59 QGSILADRREVDIRSARLPHQLGIGMVYQHFTLAPSLTVAENLLLARG-DLP-WRIRWGS 116 +G IL D + + S R GI +++Q L P L+VAEN+ + LP R+ + + Sbjct: 61 EGEILWDGKPLQAHSVRDTEAAGIVIIHQELMLVPELSVAENIFMGHEITLPGGRMNYPA 120 Query: 117 ERAVLEEFMARMPFKLATERL-VSSLSAGEKQKLEILKQLYLRRRFLILDEPTSVLTPQE 175 EE M + L VS G +Q +EI K L R LILDEP+S LT E Sbjct: 121 MYRRAEELMRELNMPDINVALPVSQYGGGHQQLVEIAKALNKDARLLILDEPSSSLTASE 180 Query: 176 ADEVLGLMHALTRQQELTVLMITHKFNEVSAYADDVTVLRKGRLVASAKVAETSPDALAH 235 +L ++ L + + + + I+HK +EV+ D ++V+R G+ +A+ + E D + Sbjct: 181 IGVLLKIIKDL-KARGVACVYISHKLDEVAEVCDTISVIRDGKHIATTPMQEMDVDKIIT 239 Query: 236 WMMGHAREEKLAVARAAVPPQA-AIG---LEVKDLT---VNNDRGVAAVRALSLQVKHGE 288 M+G RE A P + AIG LE +++T ++N R V +S V+ GE Sbjct: 240 QMVG--RE-----ITAMYPERNHAIGEVVLEARNITCYDIDNPR-RKRVDDVSFSVRRGE 291 Query: 289 IVGLAGISGNGQKELVEALLGQRR-HLLGQIRVEGAPYAATREEMRRLR--VFALPEEPL 345 I+G+AG+ G G+ ELV A+ G R GQ+ +EG P A T ++ +R + +PE+ Sbjct: 292 ILGIAGLVGAGRTELVSAIFGAYRGRYEGQVLLEGKP-ADTSSPLKSIRRGLCMVPEDRK 350 Query: 346 RNACIPGMSVAENMALRHFDVAPFKRRGWRIDRGAMKRQAQALIAAFNVKPPVPERPIGT 405 + +P + V +N+ L V RG RID A + Q I VK P PI + Sbjct: 351 HHGIVPDLDVGQNITL---TVLNRFSRGSRIDGSAELKTIQDEIGRMRVKTATPFLPITS 407 Query: 406 LSGGNVQRAVLARELGEEDLDGAANVLIVANPVFGLDFASVADIHARLLQARARGAAVLL 465 LSGGN Q+AVLA+ L + VLI+ P G+D + A+I+ + + G A+++ Sbjct: 408 LSGGNQQKAVLAKMLLAQ-----PKVLILDEPTRGVDVGAKAEIYRLISELAKAGLAIIM 462 Query: 466 VSEDLDELLELSDRILVMTEGRI 488 VS +L E+L +SDR+LV+ EGR+ Sbjct: 463 VSSELAEVLGVSDRVLVIGEGRL 485 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,512,616 Number of extensions: 61185 Number of successful extensions: 791 Number of sequences better than 1.0e-08: 128 Number of HSP's gapped: 541 Number of HSP's successfully gapped: 167 Length of query: 522 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 432 Effective length of database: 1,193,720 Effective search space: 515687040 Effective search space used: 515687040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)