BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1212.p
         (363 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310732|ref|YP_003774824.1| hypothetical protein Hsero_1400...   629   0.0  

>gi|300310732|ref|YP_003774824.1| hypothetical protein Hsero_1400
           [Herbaspirillum seropedicae SmR1]
          Length = 365

 Score =  629 bits (1623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/366 (89%), Positives = 343/366 (93%), Gaps = 4/366 (1%)

Query: 1   MTVSPLP--AWQKLKTLATLAPLAILAACATQEPG-PAPATPSKPVTVTAPAPRPVVDNP 57
           M VSPLP   WQKLKTLA LAPLA+LAACATQEP   +P + + P T TA  P+P    P
Sbjct: 1   MLVSPLPPSQWQKLKTLAALAPLALLAACATQEPTVSSPPSTTWP-TATAQPPKPAATTP 59

Query: 58  QQQQLRELINQQDRLYRVAAPLLTNNAQLCRGNARNLLGFTAKNKYSFPIEFADTARSLG 117
           QQQQL+ELI QQDRLYRVAAPLLT+NAQLCRGNARNLLGFTAKN+YSFPIE+ADTARSLG
Sbjct: 60  QQQQLQELIAQQDRLYRVAAPLLTSNAQLCRGNARNLLGFTAKNRYSFPIEYADTARSLG 119

Query: 118 YDDRLQVTGVLPGSGAEQAGIQRGDVLISVAGKPMPQGTDAERQAAVLLSPLVVKKAPIA 177
           YDDRLQVTGVLPGSGA+QAGIQRGD+L+SVAGKPMPQGTDAERQAAVLLSPLVVKKAPIA
Sbjct: 120 YDDRLQVTGVLPGSGAQQAGIQRGDLLVSVAGKPMPQGTDAERQAAVLLSPLVVKKAPIA 179

Query: 178 LGVQRNGQNSVVNVPLTYACAFSIELGNADNVNTYADGRRVLITRGMLKFTQSDDELAYL 237
           LGVQRNGQ S VNVPLT+ACAFSIELGNADNVNTYADGRRVLITRGMLKFTQSDDELAYL
Sbjct: 180 LGVQRNGQTSTVNVPLTFACAFSIELGNADNVNTYADGRRVLITRGMLKFTQSDDELAYL 239

Query: 238 IAKDMAHNILGHAIRQRMVSTIAEVIDNLLLPHPDPTTTAGTAGIRVYPQDLDAAADTLS 297
           IAKDMAHNILGHAIRQRMVSTIAEVIDNLLLPHPDPTTTAGTAGIRVYPQDLDAAADTLS
Sbjct: 240 IAKDMAHNILGHAIRQRMVSTIAEVIDNLLLPHPDPTTTAGTAGIRVYPQDLDAAADTLS 299

Query: 298 LYLLARAGYNIDNVPAFWKRLADQYPASVPNGYTALHPSTAYRLAMIEKVTQIVKAKQEA 357
           LYLLARAGY+IDNVPAFWKRLA+QYPASVPNGYTALHPST YRLAMIEKVTQIVKAKQEA
Sbjct: 300 LYLLARAGYSIDNVPAFWKRLAEQYPASVPNGYTALHPSTTYRLAMIEKVTQIVKAKQEA 359

Query: 358 GKPLVP 363
           GKPLVP
Sbjct: 360 GKPLVP 365


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,064,194
Number of extensions: 44148
Number of successful extensions: 211
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 277
Effective length of database: 1,212,660
Effective search space: 335906820
Effective search space used: 335906820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)