BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1198.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310718|ref|YP_003774810.1| phosphate regulon two-component... 436 e-124 gi|300310592|ref|YP_003774684.1| phosphate regulon two-component... 269 2e-73 gi|300310849|ref|YP_003774941.1| two component transcription reg... 151 5e-38 gi|300313896|ref|YP_003777988.1| two component transcription res... 145 4e-36 gi|300313245|ref|YP_003777337.1| two component response regulato... 142 2e-35 >gi|300310718|ref|YP_003774810.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 436 bits (1121), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/230 (93%), Positives = 223/230 (96%) Query: 1 MSKELAHILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLP 60 MSKEL HILMVEDEPSIAELLRFTM+GAGFA TIA+DVAQARK IAESLPH+VLLDWMLP Sbjct: 1 MSKELPHILMVEDEPSIAELLRFTMQGAGFATTIATDVAQARKHIAESLPHVVLLDWMLP 60 Query: 61 DSSGLVLLSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQ 120 DSSGLVLL+ELRRDQRTA+LPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQ Sbjct: 61 DSSGLVLLNELRRDQRTASLPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQ 120 Query: 121 ALLRRKAPEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRA 180 ALLRRKAPEIGSQAL+Y +ISIDVERRQVSVA K VLLDQAEFKLLRYLVAHP+RIFSRA Sbjct: 121 ALLRRKAPEIGSQALKYRDISIDVERRQVSVADKPVLLDQAEFKLLRYLVAHPERIFSRA 180 Query: 181 QLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLSTEQ 230 QLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLS EQ Sbjct: 181 QLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLSAEQ 230 >gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 269 bits (687), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 126/225 (56%), Positives = 171/225 (76%) Query: 5 LAHILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSG 64 + IL+VEDEPSIAEL+ FT++ AG+++ + S+ A A + P +VLLDWMLPD SG Sbjct: 21 MTTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSG 80 Query: 65 LVLLSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLR 124 L LLS +R D++ L VIMLTAK MEEDK+ GL+ GADDY+TKPFSP+EL AR++ALLR Sbjct: 81 LHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLR 140 Query: 125 RKAPEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLD 184 RK+PE + + G I++D VS++G + + AE+KLL++ +AHPDR+FSR+QLLD Sbjct: 141 RKSPEHAQEVMSAGPITLDPASCSVSLSGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLD 200 Query: 185 KVWGDHTFIEERTVDVHIMRLRKSLGDLAHYVQTVRGMGYKLSTE 229 +VWGDH IEERTVDVH++RLRK+L D + ++TVR +GY LST+ Sbjct: 201 RVWGDHVVIEERTVDVHVLRLRKALRDAEYLIKTVRSVGYMLSTK 245 >gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 151 bits (381), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 139/233 (59%), Gaps = 13/233 (5%) Query: 6 AHILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGL 65 HIL+V+D+ I LL ++ G A++ ++ R+++ ES +++LD LP GL Sbjct: 8 THILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGL 67 Query: 66 VLLSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRR 125 L LR T+++PVIMLTA+G D++ GL GADDY+ KPF P+EL AR++++LRR Sbjct: 68 TLCRNLRA---TSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRR 124 Query: 126 K---APEIGS---QALRYGEISIDVERRQ-VSVAGKSVLLDQAEFKLLRYLVAHPDRIFS 178 P + A+R+ ++D+ R V+ G V L AEF+LL+ + HP+R+ + Sbjct: 125 TQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLN 184 Query: 179 RAQLLDKVWGDHTFIEERTVDVHIMRLRKSLGDLAH---YVQTVRGMGYKLST 228 R QLL+ G + +R+VD+ I RLR+ LGD A ++TVR GY L+T Sbjct: 185 RDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLAT 237 >gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 145 bits (365), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 134/225 (59%), Gaps = 9/225 (4%) Query: 6 AHILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGL 65 A IL+VEDEP +AELL+ + AG++A + A + P ++LLD MLP G Sbjct: 16 ADILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGW 75 Query: 66 VLLSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTK-PFSPKELVARVQALLR 124 + +LR + +PV+MLTA+ EED+++GL GADDY+ K PFSP+E+VARV+++LR Sbjct: 76 EICRQLRT---FSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLR 132 Query: 125 RKA--PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQL 182 R A + +QA + ID R Q SV G+++ L E +LL+ + P ++FSR QL Sbjct: 133 RNALVQQRTAQAPARSLLHIDDVRHQASVRGEALNLTPLELRLLKTFASAPGQVFSREQL 192 Query: 183 LDKVWGDHTFIEERTVDVHIMRLRKSLGDL---AHYVQTVRGMGY 224 L+ + D + +R VD HI LR+ L + +Q V G+GY Sbjct: 193 LNHLHDDDRSVTDRAVDTHIKNLRRKLEPCFPGHNAIQAVYGVGY 237 >gi|300313245|ref|YP_003777337.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 142 bits (358), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 134/230 (58%), Gaps = 13/230 (5%) Query: 6 AHILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGL 65 A IL+ ED P IAE+L + G + A+D A+A +L P +VLLD +P +G Sbjct: 38 ALILIAEDAPEIAEILAAYLARNGMRSVHAADGARALELHLALKPDLVLLDIQMPQVNGW 97 Query: 66 VLLSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRR 125 +LS++R+ T PVI+LTA + DK+ GL GADDYV KPF+P E+VARV+A+LRR Sbjct: 98 QVLSQIRQRDNT---PVILLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRR 154 Query: 126 KAP---EIGSQALRYGEISIDVERRQV--SVAGKS--VLLDQAEFKLLRYLVAHPDRIFS 178 P Q LR ID E+ +V + G S ++L EFKLL L P R+FS Sbjct: 155 SLPREERDDRQVLRVPPFVIDFEQHEVVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFS 214 Query: 179 RAQLLDKVWGDHTFIEERTVDVHIMRLRKSLGDL--AHYVQTVRGMGYKL 226 RA+LL + + ERTVD H+ +LRK L DL A ++RG+GY+ Sbjct: 215 RAELLASCLPEGDTL-ERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGYRF 263 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 669,124 Number of extensions: 26000 Number of successful extensions: 243 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 205 Number of HSP's successfully gapped: 49 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)