BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1188.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310708|ref|YP_003774800.1| cell wall invasion-associated h...   395   e-111
gi|300312625|ref|YP_003776717.1| transmembrane protein [Herbaspi...   132   2e-32

>gi|300310708|ref|YP_003774800.1| cell wall invasion-associated
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 200

 Score =  395 bits (1015), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/198 (95%), Positives = 196/198 (98%)

Query: 1   MTLRRSDRIRRQTARVCALAAGLWISASAYSADLSLAAQDLPPPQATSPQAQQLISKTNL 60
           MTLRRSDRIRRQTAR CALAAGLWISASA+SADLSLAAQDLPPPQATSPQAQQLISKTNL
Sbjct: 1   MTLRRSDRIRRQTARACALAAGLWISASAHSADLSLAAQDLPPPQATSPQAQQLISKTNL 60

Query: 61  AIARLQDITNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTA 120
           AIARLQDITNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRT+
Sbjct: 61  AIARLQDITNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTS 120

Query: 121 LEISRVGEKIGRDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDES 180
           LEISRVGEKIG+DNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDES
Sbjct: 121 LEISRVGEKIGKDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDES 180

Query: 181 YWKKRFNGARRIIAGDDD 198
           YWKKRFNGARRI AG+++
Sbjct: 181 YWKKRFNGARRIAAGEEE 198


>gi|300312625|ref|YP_003776717.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  132 bits (333), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 83/122 (68%)

Query: 69  TNRASELATQALAMLGINYRYGGNSPDTGLDCSGLVRYVFKEAWGTDLPRTALEISRVGE 128
           T   +E+A  AL+++   YR+GG +P  GLDCSG+V Y+F +A    +  +A +I+R G 
Sbjct: 64  TENGNEVALYALSLIDTGYRFGGKNPSAGLDCSGMVSYIFGQAANYRISGSAADIARQGR 123

Query: 129 KIGRDNLQPGDLVFYNTLRRGFSHVGIYLGDGKFIHSPSAGGQVRIESMDESYWKKRFNG 188
           +I    L+ GDLVF+NT+ R FSHVGIYLGDG+F+H+PS  G+V I  MD  Y+ +RF  
Sbjct: 124 QIDPSQLRAGDLVFFNTMNRPFSHVGIYLGDGRFVHAPSTNGKVHITRMDNPYFSRRFEM 183

Query: 189 AR 190
           AR
Sbjct: 184 AR 185


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 501,594
Number of extensions: 18941
Number of successful extensions: 42
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)