BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1187.p
         (323 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta hydr...   551   e-158
gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane prote...   145   4e-36

>gi|300310707|ref|YP_003774799.1| esterase of the alpha-beta
           hydrolase superfamily protein [Herbaspirillum
           seropedicae SmR1]
          Length = 316

 Score =  551 bits (1419), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/322 (86%), Positives = 296/322 (91%), Gaps = 7/322 (2%)

Query: 1   MRFSFRLMAVAVASSLLLSACGTSSLLPGSSSKPVESPGTPSASVVPVAPSATAAPTPRK 60
           MRF FRL A A+AS+  LSACGTSS +PGSSS P E     S++V PV+P      TPR+
Sbjct: 1   MRFPFRLAAAALASTFFLSACGTSSWMPGSSS-PREGGTATSSTVTPVSP------TPRR 53

Query: 61  IKIGLALGGGAARGFAHIGVIKALEAQGISVDVVAGTSAGSLVGALYAAGNNGFALQKLA 120
           +KIGLALGGGAARGFAHIGVIKALEAQG+ VDVV GTSAGSLVGALYAAGN+GFALQKLA
Sbjct: 54  LKIGLALGGGAARGFAHIGVIKALEAQGVQVDVVTGTSAGSLVGALYAAGNDGFALQKLA 113

Query: 121 LAMDEAAISDWSVPLFSKVSGVLKGEGVQNYVNKAVHNVPIEKFKIPFGAVATDLRTGQP 180
           LAMDEAAISDWSVPLFSKVSGVLKGEGVQNYVNKA++NVPIEKFKIPFGAVATDLR+GQP
Sbjct: 114 LAMDEAAISDWSVPLFSKVSGVLKGEGVQNYVNKALNNVPIEKFKIPFGAVATDLRSGQP 173

Query: 181 ILFQRGNAGVAVRASSAVPGVFQSVRIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNIS 240
           ILFQRGNAG+AVRASSAVPGVFQSV+IGDHTYVDGGLVSPVPVRFARQMGADFVIAVNIS
Sbjct: 174 ILFQRGNAGIAVRASSAVPGVFQSVKIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNIS 233

Query: 241 ANPEAQAASSSSIDVLLQTFAIMGQTINQYELKNADIVLQPSLGSMKGSDFASRNVAILA 300
           ANPEAQAASSSS+DVLLQTFAIMGQTINQYELKNADIVLQP LG+MKGSDFASRNVAI+A
Sbjct: 234 ANPEAQAASSSSVDVLLQTFAIMGQTINQYELKNADIVLQPGLGAMKGSDFASRNVAIMA 293

Query: 301 GEQAATAAMPEIKRKLKLMEAG 322
           GEQAA AAMPEIKRKLK M+ G
Sbjct: 294 GEQAALAAMPEIKRKLKAMQMG 315


>gi|300311534|ref|YP_003775626.1| lipoprotein transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 758

 Score =  145 bits (366), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/289 (35%), Positives = 151/289 (52%), Gaps = 37/289 (12%)

Query: 50  PSATAAPTPRKIKIGLALGGGAARGFAHIGVIKALEAQGISVDVVAGTSAGSLVGALYAA 109
           P+AT  P PR   + L L GG ARG+AH+GV++ LE   I +D +AGTS G+L+G LYA+
Sbjct: 35  PAATQ-PRPR---VCLVLSGGGARGYAHLGVLQYLEQLHIPIDCIAGTSMGALIGGLYAS 90

Query: 110 GNNGFALQKLALAMDEAAIS----------------DWSVPL----------FSKVSGVL 143
           G +   L++   A + + I+                ++  P+              SG++
Sbjct: 91  GLDAGELERRLAATNLSDIAFDRNERSRLPQAQREDEFQYPISISAGLDGSKLKLASGLV 150

Query: 144 KGEGV----QNYVNKAVHNVPIEKFKIPFGAVATDLRTGQPILFQRGNAGVAVRASSAVP 199
           +G  +    QN+  +   N+   +  IPF AVATDL  G  ++   G+   A+RAS AVP
Sbjct: 151 QGNKLLALLQNWTAQLPANIDFARLPIPFRAVATDLSLGSEVVLDHGSLPRAMRASMAVP 210

Query: 200 GVFQSVRIGDHTYVDGGLVSPVPVRFARQMGADFVIAVNISANPEAQAASSSSIDVLLQT 259
           G+F   RI   T VDGGLVS +PV+ AR MGAD VIAVNI+   +  A   S   V  Q 
Sbjct: 211 GLFAPFRIDQRTLVDGGLVSNLPVQTARDMGADVVIAVNIATPLQDAAQLQSPTAVAQQM 270

Query: 260 FAIMGQTINQYE---LKNADIVLQPSLGSMKGSDFASRNVAILAGEQAA 305
             I+ Q   + +   L   DI+++P +  M  +DFA     + AG +AA
Sbjct: 271 VGILIQQNVKAQKALLGAQDILIEPQMEGMSFTDFARGKDGVNAGWEAA 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.131    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 818,808
Number of extensions: 32326
Number of successful extensions: 142
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 2
Length of query: 323
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,217,395
Effective search space: 289740010
Effective search space used: 289740010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)