BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1180.p (224 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310699|ref|YP_003774791.1| two component response regulato... 231 3e-62 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 65 5e-12 gi|300313830|ref|YP_003777922.1| response regulator protein [Her... 63 2e-11 gi|300309981|ref|YP_003774073.1| two component response regulato... 59 3e-10 gi|300313665|ref|YP_003777757.1| two component transcription reg... 57 1e-09 >gi|300310699|ref|YP_003774791.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 231 bits (590), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 111/223 (49%), Positives = 155/223 (69%) Query: 1 MASILLIEDILRSYRNSTVCSFLEKQGHKVSRIMADEEELMMPTQLGDIAIVNVGRASGA 60 M ++ L+E R N+ + +L GH + M LMMP + GDIAIV++GRA+G Sbjct: 1 MVAVFLVESASRRQCNAPLREYLRAYGHTLISSMEKGGGLMMPARAGDIAIVDMGRAAGP 60 Query: 61 GYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIEVMLR 120 + ++LR NAR+GILL+A+P E + +RI GL+ GADFCE +P +L+++ YI V+LR Sbjct: 61 ACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVRLDILMTYINVILR 120 Query: 121 RVAPEAWRLDTAARTLRAPQHDAVEINSREVALLKVLANSSRHAADRCAIAHAFGVEWVS 180 R+ P W+LD ARTLR P +DA+++N +E+ALL++LA +S H A R IA FG +V Sbjct: 121 RLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAANSHHLASRSDIAGVFGKPYVD 180 Query: 181 FDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYCFTEAIQA 223 FDER+LEK VSRLRRKWR+S + LPL+T+HG GY F+E IQA Sbjct: 181 FDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEPIQA 223 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 65.1 bits (157), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 26/190 (13%) Query: 48 DIAIVNVGRASGAGYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEK 107 D+ ++++ G A+ ++LR A + I++L + E V RI GL+ GAD + LP+ Sbjct: 63 DLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVD-RIIGLEMGAD--DYLPKP 119 Query: 108 L---ELINAYIEVMLRRVAPEA----------------WRLDTAARTLRAPQHDAVEINS 148 EL+ A I +LRR P+ + LD RTL+ D + + + Sbjct: 120 FNPRELV-ARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKK-NGDTISLTT 177 Query: 149 REVALLKVLANSSRHAADRCAIAH-AFGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPL 207 E ++LKV A ++R R + A G E+ FD R L+ +SRLR+ L + Sbjct: 178 GEFSVLKVFARNARQPLSREKLMEMARGREYEVFD-RSLDVQISRLRKLIEPDPANPLYI 236 Query: 208 RTVHGVGYCF 217 +TV G+GY F Sbjct: 237 QTVWGLGYVF 246 >gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/236 (27%), Positives = 106/236 (44%), Gaps = 20/236 (8%) Query: 4 ILLIEDILRSYRNSTVCSFLEKQGHKVSRIMADEEELMMPTQ-LGD---IAIVNVGRASG 59 IL+++D ++ + + ++LEK ++V R+ D + Q L D + I++V Sbjct: 5 ILIVDDDQKT--RTLLKAYLEKNQYEV-RLAHDGATFLAEFQRLADELSLVILDVMLPDT 61 Query: 60 AGYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIEVML 119 G+AL + +R + I+L AS E T R+ GL+ GAD A P + A I+ + Sbjct: 62 DGFALCKAVRRKSNVPVIMLTASSDE--TDRVVGLELGADDYIAKPYSPRELLARIKAIH 119 Query: 120 RRV------APEAWR-----LDTAARTLRAPQHDAVEINSREVALLKVLANSSRHAADRC 168 RR+ AP +R LDT RTL Q D V + + LLK DR Sbjct: 120 RRIGIDSSAAPRYYRFAGFSLDTVERTLVDSQGDIVPLTGMDYQLLKYFVEHPGDVLDRN 179 Query: 169 AIAHAFGVEWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYCFTEAIQAC 224 + +R L+ +S+LR + D ++TV G GY F+ + A Sbjct: 180 VLCEETRGRDAGPLDRSLDVQISKLRLRLNDGGRQPHLIKTVRGAGYVFSADVSAA 235 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 32/231 (13%) Query: 4 ILLIED-------ILRSYRNSTVCSFLEKQGHKVSRIMADEEELMMPTQLGDIAIVNVGR 56 ILL ED + RS R+S + K G + AD + TQ D+ I+++G Sbjct: 3 ILLAEDDSVLADGLTRSLRHSGYAADCVKNG-----VEADS---ALSTQDFDLLILDLGL 54 Query: 57 ASGAGYALTQQLRNANARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIE 116 +G + ++LR N+R+ +L+L + +SV R+ GLD GAD A P L + A + Sbjct: 55 PKMSGLEVLRRLRARNSRLPVLILTAA-DSVEQRVQGLDLGADDYMAKPFALSELEARVR 113 Query: 117 VMLRRVA---PEAWR-----LDTAARTLRAPQHDAVEINSREVALLKVLAN-SSRHAADR 167 + RR A P R D R + +E+++RE+ LL+VL + R + Sbjct: 114 ALTRRGAGGGPTVIRHGPLSYDQVGRIAYIGEQ-MLELSARELGLLEVLLQRTGRLVSKE 172 Query: 168 CAIAHAFGVEWV-SFDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYCF 217 + H EW +E V RLR+K + + + TV G+GYC Sbjct: 173 QLVDHL--CEWGEEVSNNAIEVYVHRLRKKIE---VGGVRIATVRGLGYCL 218 >gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 32/221 (14%) Query: 13 SYRNSTVCSFLEKQGHKVSRIMADEEELMMPTQLGDIAIVNVGRASGAGYALTQQLRNAN 72 SYR T G ++ RI+ E DI I+++ G L ++LR Sbjct: 28 SYRPFTAAG-----GQEMWRILGSERI--------DIIILDLMMPGEDGLELCRELRKK- 73 Query: 73 ARMGILLLASPQESVTTRISGLDHGADFCEALPEKLELINAYIEVMLRRV--APE----- 125 R L++ + + ++ RI GL+ GAD P + A I+V+LRR PE Sbjct: 74 -RNTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRRARSFPEKLEAD 132 Query: 126 --------AWRLDTAARTLRAPQHDAVEINSREVALLKVLANSSRHAADRCAIAHA-FGV 176 W+LDT AR +P + + + +L+ L R A R + + +G Sbjct: 133 RVSHIHFAGWKLDTQARQAISPSGVTITLGGSDYQVLRALLEHPRRALSRDFLLNTVYGK 192 Query: 177 EWVSFDERVLEKTVSRLRRKWRDSTMYDLPLRTVHGVGYCF 217 E + FD R ++ +SRLR++ D+ +RTV GY Sbjct: 193 EAMPFD-RSIDVCISRLRQQLGDNPREPALIRTVRNTGYML 232 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 662,216 Number of extensions: 25282 Number of successful extensions: 129 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 138 Number of HSP's successfully gapped: 6 Length of query: 224 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 142 Effective length of database: 1,231,600 Effective search space: 174887200 Effective search space used: 174887200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)