BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1174.p (575 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sen... 819 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 403 e-113 gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis tra... 400 e-112 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 399 e-112 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 398 e-112 >gi|300310695|ref|YP_003774787.1| methyl-accepting chemotaxis sensory transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 585 Score = 819 bits (2116), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/586 (74%), Positives = 507/586 (86%), Gaps = 12/586 (2%) Query: 1 MTLSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEMRLMLES 60 M L++LKIGTRLY+GFGLVAAILV+LVSVAY NFARLGAAN++N H+YEVRA++R M ES Sbjct: 1 MKLADLKIGTRLYMGFGLVAAILVILVSVAYTNFARLGAANELNVHTYEVRAQLRAMAES 60 Query: 61 LINIETGARGFALTGVEASLEPLQQGLAGFKEHYEKARQLTADNSAQQQRLQQVADAQQR 120 LINIETG RGF+L+G++ASLEP G+ FK EK R LT+DN+ QQQRLQ+++D++QR Sbjct: 61 LINIETGQRGFSLSGIDASLEPYHLGMTTFKTALEKTRTLTSDNTLQQQRLQELSDSEQR 120 Query: 121 WMSTAIEPAIALRRAVREGREEMGKLVALAQSGRGKTEMDNMRAVFADMDRAESQLLQQR 180 W+ +AI+PAI LRRAVREGRE+M +VA Q+G+GK++MD+MR + D+DR ES LL +R Sbjct: 121 WLKSAIDPAIELRRAVREGREQMAAVVAFEQAGKGKSQMDSMRVLLDDLDRTESALLGER 180 Query: 181 SDAADQLEALTGKTLIIGGIISVMLAMLLAWWLSNHITRPLAVAVRLARQVAGGDLSACI 240 ++ A L ++T TLI GG I++MLA+LLAWWL+N+ITRPLA+AV+LAR+VA GDL+A I Sbjct: 181 AEEAAALRSVTSTTLIGGGAIALMLAVLLAWWLANNITRPLALAVQLARRVASGDLTARI 240 Query: 241 EVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASS 300 EV SRDETG LL AL+DMN SLVRIVSGVRRGT+MIATASS+IA+GNLDLSSRTEQQASS Sbjct: 241 EVRSRDETGALLGALKDMNESLVRIVSGVRRGTEMIATASSEIATGNLDLSSRTEQQASS 300 Query: 301 LEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVSRVVQTMEEINASSRKI 360 LEETASSMEELTSTVQQN+ANAR+AN MAQAASDIASSGGGVV+RVV TMEEIN SSRKI Sbjct: 301 LEETASSMEELTSTVQQNTANAREANRMAQAASDIASSGGGVVARVVDTMEEINDSSRKI 360 Query: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALI 420 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIKALI Sbjct: 361 VDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKALI 420 Query: 421 SDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEEQRSGIEQVSQAVGQMD 480 SDSVAKVESGS+LVNEAGDTMREIV+SVQRVT+MINEISAAGEEQRSGIEQVSQAVGQMD Sbjct: 421 SDSVAKVESGSLLVNEAGDTMREIVESVQRVTNMINEISAAGEEQRSGIEQVSQAVGQMD 480 Query: 481 QVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDA-QA-EQAPLQSTSSVA------ 532 QVTQQNAALVE+AAAASQSLQEQAQELAQAVS+FRL+A QA E AP + +SVA Sbjct: 481 QVTQQNAALVEQAAAASQSLQEQAQELAQAVSVFRLEAGQALEVAPEPAPASVAASRSGV 540 Query: 533 -PVVKTPAVVPAPVKPRREPR-QPRLAAPMSAGAMSGA-SDDWVTF 575 P ++ + +P+PV P P P AP S +S A +D+WVTF Sbjct: 541 RPATRS-SRLPSPVGPSASPSASPMHPAPASGSRLSSADADEWVTF 585 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 403 bits (1036), Expect = e-113, Method: Compositional matrix adjust. Identities = 268/544 (49%), Positives = 346/544 (63%), Gaps = 46/544 (8%) Query: 3 LSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAAND--MNDHSYEVR--AEMRLML 58 NLK+ RL F + A+L ++ A++ + A D +ND +VR ++R + Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 Query: 59 ESLINIETGARGFALT-----GVEASLEPLQQGLAGFKEHYEK--ARQLTADNSAQQQRL 111 I RG A+ E L+ + KE +K ARQ+TA + + L Sbjct: 65 NEQIKY---LRGIAIDIENRPANEKRFAQLEVAVKQTKEALDKITARQVTAVGQKKAKAL 121 Query: 112 QQVADAQQRWMSTAIEPAIALRRAVREGREEMGKLVALAQSGRGKTEMDNMRAVFADMDR 171 E IA + +AL ++G + + + D Sbjct: 122 D--------------EARIAFDAS-------KADFLALVKAGNSTSADEYVLRKITDTQN 160 Query: 172 AESQLLQQRSDAAD-QLEALTGKTLIIGGII----------SVMLAMLLAWWLSNHITRP 220 L + +D+ D QL+A K + G + +V+ A++L + ++ I +P Sbjct: 161 NYLALARAFADSQDAQLQAEGAKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKP 220 Query: 221 LAVAVRLARQVAGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATAS 280 L AVR+A VA GDL+ IE SRDETG+L+ ALR MN +L+ IVSGVRRGT+ I TAS Sbjct: 221 LTEAVRVAENVAAGDLTTRIEPHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTAS 280 Query: 281 SQIASGNLDLSSRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGG 340 +IASGNLDLS+RTEQQA SLEETAS+MEE+TSTV+QN+ NARQAN MA +AS+IA GG Sbjct: 281 GEIASGNLDLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGG 340 Query: 341 GVVSRVVQTMEEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 400 +V RVV TM+EIN SSRKIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT Sbjct: 341 QIVGRVVHTMDEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 400 Query: 401 EVRSLAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISA 460 EVRSLAQRSAAAAKEIKALI+DSV KVE GS LV +AG TM ++V SV+ VT ++ EISA Sbjct: 401 EVRSLAQRSAAAAKEIKALIADSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISA 460 Query: 461 AGEEQRSGIEQVSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQA 520 A EQ SGIE++++AV QMD+ TQQNAALVE+AAAA++S+QEQA L Q++SIF+L+ A Sbjct: 461 ASAEQSSGIEEINRAVTQMDEGTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKLEQGA 520 Query: 521 EQAP 524 P Sbjct: 521 ASIP 524 >gi|300313926|ref|YP_003778018.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 582 Score = 400 bits (1027), Expect = e-112, Method: Compositional matrix adjust. Identities = 270/594 (45%), Positives = 368/594 (61%), Gaps = 40/594 (6%) Query: 6 LKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEMRLMLESLINIE 65 + +G +L + F V + ++ S++ +NF RL A+ MN H+Y+V + ML +++NIE Sbjct: 5 MTVGRKLGLAFLCVVVVALVGSSLSLLNFNRLEDASAMNIHTYQVMGKADDMLLNMVNIE 64 Query: 66 TGARGFALTGVEASLEPLQQGLAGFKEHYEKARQLTADNSAQQQRLQQVADAQQRWMSTA 125 TG RG+ +G EA L+P + G FK ++ A+ LTADN QQ+RL A+ + +S Sbjct: 65 TGIRGYVASGNEAFLDPYKGGRKDFKVAFDDAKSLTADNPVQQKRL-----AEMQELSNK 119 Query: 126 IEPA----IALRRAVREGREEMGKLVALAQSGRGKTEMDNMRAVFADMDRAESQLLQQRS 181 IE I LR+ + L + K MD R V + AE LL++R Sbjct: 120 IEEIDQNLIKLRKEANASGSQQA-LQTYFGATHDKIFMDRFRVVQKEFVDAEESLLKERG 178 Query: 182 DAADQLEALTGKTLIIGGIISVMLAMLLAWWLSNHITRPLA----VAVRLARQVAGGDLS 237 + L T +I G ++V+LA+ ++ I L A +A+Q+A GDL+ Sbjct: 179 ELVRSLSKSTLIVMIAAGALTVLLAIGAGLLITRSIINALGGEPGAAADVAQQIAAGDLT 238 Query: 238 ACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQ 297 + + D + L+A+L M L IV G++ + I+ A+++IA+GN DLS RTE+Q Sbjct: 239 VAVPLKPND-SHSLMASLGSMREQLTTIVRGIQTSGESISVAANEIATGNTDLSQRTEEQ 297 Query: 298 ASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVSRVVQTMEEINASS 357 A+SLEETASSMEELTSTV+QNS NARQAN +A+ AS +A+ GG VVSRV+ TM EI+ SS Sbjct: 298 AASLEETASSMEELTSTVRQNSDNARQANTLAENASTLAAKGGEVVSRVIDTMNEISDSS 357 Query: 358 RKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIK 417 K+ DII+VI+GIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAK++K Sbjct: 358 SKVSDIITVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKDVK 417 Query: 418 ALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEEQRSGIEQVSQAVG 477 LI+ S +VE G+ LV EAG T+ E+V +V+ VT ++NEI+AA EQ +GIEQV+QA+ Sbjct: 418 DLITLSGERVERGTHLVGEAGQTINEVVQAVRNVTDIMNEITAASSEQTTGIEQVNQALS 477 Query: 478 QMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAEQAPLQSTSSVAPVVKT 537 QMDQVTQQNAALVE+AAAA+Q++ EQA EL AV +F+ P PV Sbjct: 478 QMDQVTQQNAALVEQAAAAAQAMSEQATELRSAVGVFKTGGGTAVQP-------RPVSPR 530 Query: 538 PAVV--PAP----VKPRREPRQPR----------LAAPMSAGAMSGASDDWVTF 575 PA V PAP K R P P+ + S+ + AS +W TF Sbjct: 531 PAKVVNPAPKVGAAKTRALP--PKAAATAHTANAVKKEASSPKAADASGEWETF 582 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 399 bits (1024), Expect = e-112, Method: Compositional matrix adjust. Identities = 258/484 (53%), Positives = 329/484 (67%), Gaps = 54/484 (11%) Query: 77 EASLEP-LQQGLAGFKEHYEKARQLTADNSAQQQRLQQVADAQQRWMSTAIEPAIALRRA 135 E L P +++ +A +KE +E+ L +Q +Q A A ST + Sbjct: 112 EKELYPEIERNIALYKEAHERMSALF------EQDQKQAAHALMNSTSTPV--------- 156 Query: 136 VREGREEMGKLVALAQSGRGKTEMDNMRAVFADMDRAESQLLQQRSDAADQLEALTGKTL 195 R+ +E++G+L +E+++ A +D D AD + + Sbjct: 157 YRKLQEQIGEL----------SEVNSKGAALSDAD-------------ADHIYGQANMAI 193 Query: 196 IIGGIISVMLAMLLAWWLSNHITRPLAVAVRLARQVAGGDLSACIEVTSRDETGELLAAL 255 + V+LAM L+WW++ + RPLA AV +ARQVA GDL+A I RDETG+LL AL Sbjct: 194 LALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPTAHRDETGQLLEAL 253 Query: 256 RDMNASLVRIVSGVRRGTDMIATASSQIASGNLDLSSRTEQQASSLEETASSMEELTSTV 315 R MN +L+ IV VR+GTD I TAS++IA+GN+DLSSRTEQQA +LEETAS+MEELTSTV Sbjct: 254 RQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALEETASAMEELTSTV 313 Query: 316 QQNSANARQANLMAQAASDIASSGGGVVSRVVQTMEEINASSRKIVDIISVIDGIAFQTN 375 +QNS NARQAN +A AS++A +GG VV +VV TM IN SSRKIVDII VIDGIAFQTN Sbjct: 314 RQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVDIIGVIDGIAFQTN 373 Query: 376 ILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALISDSVAKVESGSVLVN 435 ILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAA EIKALI DSVAKV++GS LV+ Sbjct: 374 ILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDDSVAKVDTGSKLVD 433 Query: 436 EAGDTMREIVDSVQRVTSMINEISAAGEEQRSGIEQVSQAVGQMDQVTQQNAALVEEAAA 495 EAG TM E+V SV+RV+ ++ EI+AAG EQ GIEQ++ AV QMD+ TQQNAALVE+AAA Sbjct: 434 EAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDENTQQNAALVEQAAA 493 Query: 496 ASQSLQEQAQELAQAVSIFRLDAQAEQAPLQSTSSVAPVVKTPAVVPAPVKPRRE--PRQ 553 A+++LQEQA L++ VS+FRLDAQ PVV + A A +P R+ P + Sbjct: 494 AAKALQEQAGRLSETVSVFRLDAQH-----------VPVVVSRAA--ATAQPERDITPAR 540 Query: 554 PRLA 557 P LA Sbjct: 541 PALA 544 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 398 bits (1022), Expect = e-112, Method: Compositional matrix adjust. Identities = 280/565 (49%), Positives = 367/565 (64%), Gaps = 51/565 (9%) Query: 3 LSNLKIGTRLYIGFGLVAAILVLLVSVAYVNFARLGAANDMNDHSYEVRAEM-------- 54 + N+ IG RL +GF L IL + +A + RL DH + EM Sbjct: 4 IGNMNIGRRLTLGFAL---ILTFSIIIAGIGLWRL-------DHVAQATREMMAEPLKTE 53 Query: 55 RLMLESLINIETGAR-GFAL-TGVEASLEPL--QQGLAGFKEHYEKARQLTADNSAQQQR 110 RLM + N+ G R A+ + +L P + A K E +Q+ A S +++ Sbjct: 54 RLMADWYTNLVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEK 113 Query: 111 --LQQVADAQQRWMSTAIEPAIALRRAVREGR-EEMGKLVALAQSGRGKTEMDNMRAVFA 167 Q++ + ++ ++S+ E + +A G EE +++ D MR Sbjct: 114 ALFQKIGELRKLYLSSRDE----INKAKAAGNTEEAMRILDQVFVPNATAYQDTMRK-LV 168 Query: 168 DMDRAESQLLQQRSDAADQLEALTGKT---LIIGGIISVMLAMLLAWWLSNHITRPLAVA 224 D R E D A +++A+ K+ +++ + ++L ++ A +L+ IT+PL A Sbjct: 169 DFQRKE------MDDTAREIDAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRA 222 Query: 225 VRLARQVAGGDLSACIEVTSRDETGELLAALRDMNASLVRIVSGVRRGTDMIATASSQIA 284 V ++R VA GDLS+ I VTSRDETG+LL +L+DMN SL IVS VR GTD I+TASS+IA Sbjct: 223 VDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIA 282 Query: 285 SGNLDLSSRTEQQASSLEETASSMEELTSTVQQNSANARQANLMAQAASDIASSGGGVVS 344 +GNLDLSSRTEQQASSL ETAS+MEEL STV+QN+ NARQA+ +A +AS +A GGGVVS Sbjct: 283 AGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVS 342 Query: 345 RVVQTMEEINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRS 404 +VV TM INASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+ Sbjct: 343 QVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRT 402 Query: 405 LAQRSAAAAKEIKALISDSVAKVESGSVLVNEAGDTMREIVDSVQRVTSMINEISAAGEE 464 LAQRSA+AAKEIK LI+DSV KV+ GS LV +AG+TM+E+V SV+RVT ++ EISAA E Sbjct: 403 LAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTE 462 Query: 465 QRSGIEQVSQAVGQMDQVTQQNAALVEEAAAASQSLQEQAQELAQAVSIFRLDAQAEQAP 524 Q GIEQ++ A+ QMDQVTQQNAALVEEAAAA+ S+Q QA L Q VS+FRL +E+ P Sbjct: 463 QTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL---SEREP 519 Query: 525 LQSTSSVAPVVKTPAVVP-APVKPR 548 L V + V P +PV P+ Sbjct: 520 L--------VRREIDVTPSSPVLPQ 536 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.125 0.324 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,049,599 Number of extensions: 31300 Number of successful extensions: 544 Number of sequences better than 1.0e-08: 71 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 72 Length of query: 575 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 485 Effective length of database: 1,193,720 Effective search space: 578954200 Effective search space used: 578954200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)