BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1172.p (577 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 752 0.0 gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis tra... 674 0.0 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 477 e-135 gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis pro... 466 e-132 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 461 e-130 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/577 (73%), Positives = 483/577 (83%), Gaps = 2/577 (0%) Query: 1 MKIRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGE 60 MKI D+KISVRLG CFAALI VMCVIA VGVK+L +VSDATDEIV+DRYVKVAL QI + Sbjct: 2 MKISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITD 61 Query: 61 KVNTAARALRNAIIAPDQATADKYVERAVNNTREVNDLMADLEKRLNTAKGKEVFVKLQE 120 KVNT AR+LRNAI+A + KY++R T +V++ +A++EKR NT +G E+ L++ Sbjct: 62 KVNTGARSLRNAIMARNPEEQKKYLDRMDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 121 ARSSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGVAQ 180 AR+ Y+K R K+++LI Q+K E T +LF + IP QDKYFAA+K+M +FQ ++M++ + Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAHLFDKTIPVQDKYFAAVKEMVSFQSSLMDKSAER 181 Query: 181 SDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQIAAT 240 + AAS++A+N M+VLS VAVLLS L A LITRSITRPLNEAVQVATAVAAGDLTVQI AT Sbjct: 182 ASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIEAT 241 Query: 241 SKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGALEE 300 SKDETG LL +LK+MNDNLHRIV+ VR GTDTINTAS EIA+GNLDLSSRTE+QAGALEE Sbjct: 242 SKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGALEE 301 Query: 301 TASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKIVDI 360 TASAMEELTSTV+QNADNARQANTLAETASQVAIQGGSVV EVVQTMGQINDASRKIVDI Sbjct: 302 TASAMEELTSTVRQNADNARQANTLAETASQVAIQGGSVVGEVVQTMGQINDASRKIVDI 361 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDTS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIK LID S Sbjct: 362 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKSLIDAS 421 Query: 421 VERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 480 VERV++GSRLV QAG TMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT Sbjct: 422 VERVESGSRLVGQAGATMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 481 Query: 481 QQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRTQRTVDVTPRP 540 QQNAALVE+AAAAAQSLQEQSGRL +TV IF+L +D +P +AP QR+V V P Sbjct: 482 QQNAALVEQAAAAAQSLQEQSGRLSDTVGIFRL-GNDHAHQPSPLSAP-VQRSVQVAPAR 539 Query: 541 AALPRKPAARPSSAASAPASRPTMQAAAAVDGDWEQF 577 L RKP R S+ A + + + AA DG WEQF Sbjct: 540 PVLARKPVTRTSAPAKSIPAAQPVAQAALADGQWEQF 576 >gi|300313820|ref|YP_003777912.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 597 Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/597 (66%), Positives = 465/597 (77%), Gaps = 20/597 (3%) Query: 1 MKIRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGE 60 MK++DIKISVRL VCFA LI VMC+I VG+KSL +S ++ IV DRY K+AL +I + Sbjct: 1 MKLKDIKISVRLAVCFAVLIGVMCLITGVGMKSLSSISKSSALIVEDRYEKIALAVEIRD 60 Query: 61 KVNTAARALRNAIIAPDQATADKYVERAVNNTREVNDLMADLEKRLNTAKGKEVFVKLQE 120 VN AAR LRNA++ + A +Y++R+ N+ + + + +EK L+TA+G+E+F +QE Sbjct: 61 NVNGAARNLRNALLGRNLEEATRYLDRSAANSAKTTEALGKMEKILSTARGRELFQSIQE 120 Query: 121 ARSSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGVAQ 180 ARS+Y PRDK+ ELI+Q+K E + LF +VIPAQDKYF L FQ ++MEQ V + Sbjct: 121 ARSAYNTPRDKLRELIKQQKKEEAVELLFTQVIPAQDKYFQVLDQFVAFQKSLMEQSVTE 180 Query: 181 SDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQIAAT 240 + +A+ M+ LSAVA+ L V+AA+L+TRSITRPLNEAV VA+AVAAGDLTVQI AT Sbjct: 181 GRDTTQSAIAMMLGLSAVAIALCVIAAWLVTRSITRPLNEAVSVASAVAAGDLTVQIGAT 240 Query: 241 SKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGALEE 300 SKDETG LLA+LK+MND+LHRIVS VR+G+DTINTAS+EIA+GNLDLSSRTEEQAGALEE Sbjct: 241 SKDETGALLAALKSMNDSLHRIVSEVRQGSDTINTASAEIATGNLDLSSRTEEQAGALEE 300 Query: 301 TASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKIVDI 360 TASAMEELTSTVKQNADNARQAN+LA TAS+VA+QGGSVV +VVQTMG+INDASRKIVDI Sbjct: 301 TASAMEELTSTVKQNADNARQANSLAATASEVAVQGGSVVGQVVQTMGEINDASRKIVDI 360 Query: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLIDTS 420 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSA+AAKEIK LID S Sbjct: 361 ISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKALIDDS 420 Query: 421 VERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDEVT 480 V RVDNGSRLVEQAG TM EVVASV+RVTDVVAEI+AAS EQSDGIEQIN AI QMD+VT Sbjct: 421 VSRVDNGSRLVEQAGTTMTEVVASVRRVTDVVAEISAASNEQSDGIEQINHAITQMDQVT 480 Query: 481 QQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHD--------QQRAAAPAAAPRTQR 532 QQNAALVEEAAAAAQSLQEQS RL TVS+FKLSSHD + A A+ P Sbjct: 481 QQNAALVEEAAAAAQSLQEQSTRLSATVSVFKLSSHDTPHAAAPRKPAPAQAASRPAAAA 540 Query: 533 TVDVTPRPAALPRK------------PAARPSSAASAPASRPTMQAAAAVDGDWEQF 577 TV P A P A PS A+ +++ +A AA DGDWEQF Sbjct: 541 TVRTAPSKPAAVLASSASPASPASTTPKALPSKPAAPASAKAGSKAMAADDGDWEQF 597 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 477 bits (1228), Expect = e-135, Method: Compositional matrix adjust. Identities = 281/532 (52%), Positives = 377/532 (70%), Gaps = 10/532 (1%) Query: 3 IRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGEKV 62 +++K++VRL FA ++A++ V++V + ++ A D+IV+DRY+KV + + V Sbjct: 5 FKNLKVAVRLAAVFAFIVALLAVVSVTAFIKINNINRAIDQIVNDRYLKVRWAFDLRDGV 64 Query: 63 NTAARALRNAIIAPDQATADK----YVERAVNNTREVNDLMADLEKRLNTAKGKEVFVKL 118 N + LR I + A++ +E AV T+E D + R TA G++ L Sbjct: 65 NEQIKYLRGIAIDIENRPANEKRFAQLEVAVKQTKEALD---KITARQVTAVGQKKAKAL 121 Query: 119 QEARSSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQGV 178 EAR ++ + + L++ + +Y+ +++ Q+ Y A + Q A ++ Sbjct: 122 DEARIAFDASKADFLALVKAGNSTSADEYVLRKITDTQNNYLALARAFADSQDAQLQAEG 181 Query: 179 AQSDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQIA 238 A++ A A A+ + S AVL +++ +L+ RSI +PL EAV+VA VAAGDLT +I Sbjct: 182 AKAVADGAMAIEVTLACSMAAVLAAIILGYLMARSIVKPLTEAVRVAENVAAGDLTTRIE 241 Query: 239 ATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAGAL 298 S+DETG L+ +L+ MNDNL IVS VR GT++I TAS EIASGNLDLS+RTE+QAG+L Sbjct: 242 PHSRDETGQLMQALRKMNDNLIEIVSGVRRGTESITTASGEIASGNLDLSARTEQQAGSL 301 Query: 299 EETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRKIV 358 EETASAMEE+TSTV+QNADNARQAN +A +AS++A+QGG +V VV TM +IN +SRKIV Sbjct: 302 EETASAMEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIV 361 Query: 359 DIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGLID 418 DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI Sbjct: 362 DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIA 421 Query: 419 TSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQMDE 478 SV +V+ GS LV QAG TME+VV+SV+ VTD+VAEI+AAS EQS GIE+IN+A+ QMDE Sbjct: 422 DSVGKVEGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDE 481 Query: 479 VTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRT 530 TQQNAALVE+AAAAA+S+QEQ+ RL +++SIFKL +Q A+ PAA RT Sbjct: 482 GTQQNAALVEQAAAAAKSMQEQAVRLTQSISIFKL---EQGAASIPAAPVRT 530 >gi|300312730|ref|YP_003776822.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 583 Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust. Identities = 291/563 (51%), Positives = 381/563 (67%), Gaps = 18/563 (3%) Query: 1 MKIRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGE 60 M+ ++ I+ RL + F+ LI V+ I +G+ L ++ A D +V+DRY K+A++N I Sbjct: 1 MRFNNLSIATRLAIAFSILILVIAGIVALGLARLADINKALDLVVNDRYKKIAIINTISG 60 Query: 61 KVNTAARALRNAIIAPDQA---TADKYVER-AVNNTREVNDLMADLEKRLNTAKGKEVFV 116 KV+ A +LRN ++ D A K +E + NT+ L +L + + + K Sbjct: 61 KVDDVAISLRNQLLMTDPAQIAAEQKTIESLSAENTK----LYDELTRLVANPEAKAKLD 116 Query: 117 KLQEARSSYAKPRDKIIELIRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQVAMMEQ 176 K+ E R SYA R +I +L + E++P Q YF+ L +++ Q +M+Q Sbjct: 117 KVTETRKSYAALRKQIDKLQSSGDKDAAIKLMLSEMVPLQKIYFSQLDELSDTQQKLMDQ 176 Query: 177 GVAQSDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAAGDLTVQ 236 V Q++AA MV+ +A + A+ I+RSITRPL+ AV+VA VAAGDLT Sbjct: 177 SVDQAEAAYETTRMIMVIAGVLAATFAAFIAWTISRSITRPLSRAVEVAETVAAGDLTAV 236 Query: 237 IAATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSRTEEQAG 296 IAA S DETG LL +L AMN L IV VR GTD++ TAS++IA+GNLDLSSRTEEQA Sbjct: 237 IAAHSNDETGRLLQALAAMNQKLKAIVLEVRRGTDSMVTASTQIATGNLDLSSRTEEQAS 296 Query: 297 ALEETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQINDASRK 356 ALEETAS++EELTS+VKQNAD+ R+++ LA ASQVA QGG V +VVQTMG IND+S K Sbjct: 297 ALEETASSLEELTSSVKQNADHTRKSSELAANASQVANQGGLAVKQVVQTMGAINDSSHK 356 Query: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKEIKGL 416 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA AAKEIK L Sbjct: 357 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRGLAQRSATAAKEIKEL 416 Query: 417 IDTSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQINQAIVQM 476 I+ SV +V +G+ LV QAG+TM+ VV S+++V+ +V EI+AA+ EQSDGIEQ+NQAI+QM Sbjct: 417 INDSVNQVTSGTELVAQAGSTMDAVVNSIEQVSHIVGEISAATREQSDGIEQVNQAIMQM 476 Query: 477 DEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQQRAAAPAAAPRTQRTVDV 536 D TQQNAALVEEAAAAAQ+LQ+Q+ RL++ V +F+L D+ + PA + V Sbjct: 477 DNTTQQNAALVEEAAAAAQALQDQAQRLLDLVGVFRL---DEVGGSGPAPSA-------V 526 Query: 537 TPRPAALPRKPAARPSSAASAPA 559 P L + AA P + S PA Sbjct: 527 APVAPVLRKVSAAAPRATKSLPA 549 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 461 bits (1185), Expect = e-130, Method: Compositional matrix adjust. Identities = 281/545 (51%), Positives = 373/545 (68%), Gaps = 30/545 (5%) Query: 3 IRDIKISVRLGVCFAALIAVMCVIAVVGVKSLWVVSDATDEIVSDRYVKVALVNQIGEKV 62 ++++KI VRL + F AL+ +M V+ +GV L + DATD++ ++AL + + V Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMT-----RIALKKE-RDAV 54 Query: 63 NTAARALRN-----AIIAPDQATADKYVERAVN-NTREVNDLMADLEKRLNTAKGKEVFV 116 A N A++ D Y ++ ++ + ++ L ++E + A+ K +F Sbjct: 55 QWHAAIKENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFD 114 Query: 117 KLQEARSSYAKPRDKIIEL------IRQRKTAETTDYLFKEVIPAQDKYFAALKDMTTFQ 170 ++ + R++Y R I ++ R R+ +TT ++ D Y + FQ Sbjct: 115 EVGKLRAAYRATRQSIFDVKTAGDDARAREMTDTT------LVKMMDDYADGVLRYADFQ 168 Query: 171 VAMMEQGVAQSDAASANAVNTMVVLSAVAVLLSVLAAFLITRSITRPLNEAVQVATAVAA 230 +++Q A + + + ++ L A+ ++L A+L+TRSITRPLN+AV +A VAA Sbjct: 169 KQVIDQTAAAINRDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAA 228 Query: 231 GDLTVQIAATSKDETGVLLASLKAMNDNLHRIVSLVREGTDTINTASSEIASGNLDLSSR 290 GDLT +I ++S+DETG LLA+LK MN NL IV VR GT+TINTAS EIA+GNLDLS+R Sbjct: 229 GDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSAR 288 Query: 291 TEEQAGALEETASAMEELTSTVKQNADNARQANTLAETASQVAIQGGSVVSEVVQTMGQI 350 TE QAG+LEETASAME+LTSTVKQNADNARQAN LA +ASQVA QGG+VV +VV TMG I Sbjct: 289 TEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAI 348 Query: 351 NDASRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAA 410 + +S+KI DII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA Sbjct: 349 HASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 408 Query: 411 KEIKGLIDTSVERVDNGSRLVEQAGNTMEEVVASVKRVTDVVAEITAASGEQSDGIEQIN 470 KEIK LID SVE+VD+GSRLV +AG+TM+EVV SV RVT VV EIT AS EQSDGIEQ+N Sbjct: 409 KEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVN 468 Query: 471 QAIVQMDEVTQQNAALVEEAAAAAQSLQEQSGRLVETVSIFKLSSHDQ------QRAAAP 524 AI +DE TQQNAALVE+AAAAA+S+Q+Q+ L + VS+F+L Q QR +P Sbjct: 469 LAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVSVFRLEDDAQVLAVAVQRGTSP 528 Query: 525 AAAPR 529 + R Sbjct: 529 STVVR 533 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.318 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,119,508 Number of extensions: 34912 Number of successful extensions: 562 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 274 Number of HSP's successfully gapped: 71 Length of query: 577 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 487 Effective length of database: 1,193,720 Effective search space: 581341640 Effective search space used: 581341640 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)