BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1169.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein ...   197   2e-52
gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein ...    91   4e-20
gi|300310470|ref|YP_003774562.1| translation initiation inhibito...    55   2e-09

>gi|300313660|ref|YP_003777752.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score =  197 bits (501), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 103/107 (96%)

Query: 1   MSPIQRFNTNARMSQLVTANGFAFVAGQVPNNAGAPIPQQASEVLAKIDAQLQAQGIGRE 60
           M+ I+RFNTNARMSQLV ANGFAFV+GQVP++AGAPI QQA+EVLAKIDAQLQAQGIGRE
Sbjct: 1   MNKIERFNTNARMSQLVIANGFAFVSGQVPDHAGAPIAQQAAEVLAKIDAQLQAQGIGRE 60

Query: 61  RIVSANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLD 107
           RIVSANVWLSSPEHFAAFNAVW+AW+PAGHAPTRACVQALLM PGLD
Sbjct: 61  RIVSANVWLSSPEHFAAFNAVWEAWLPAGHAPTRACVQALLMLPGLD 107


>gi|300311291|ref|YP_003775383.1| endoribonuclease L-PSP protein
           [Herbaspirillum seropedicae SmR1]
          Length = 116

 Score = 90.5 bits (223), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 65/112 (58%)

Query: 4   IQRFNTNARMSQLVTANGFAFVAGQVPNNAGAPIPQQASEVLAKIDAQLQAQGIGRERIV 63
           +QR +   R+S++   NG  ++AGQ+  +    I  Q  EVL  ID  L   G  + +I+
Sbjct: 3   VQRLHVGNRLSEVAIHNGTVYLAGQIAEDTTQNIEGQTREVLGHIDRLLAEAGSDKSKIL 62

Query: 64  SANVWLSSPEHFAAFNAVWDAWVPAGHAPTRACVQALLMAPGLDVEVAVIAA 115
           S  ++LS  + FA  NAVWD WV  G+AP RA V+A L  P L VE+ ++AA
Sbjct: 63  SCQIFLSDVKDFAGMNAVWDEWVAPGNAPPRATVEAKLARPELLVEIIIVAA 114


>gi|300310470|ref|YP_003774562.1| translation initiation inhibitor
           protein [Herbaspirillum seropedicae SmR1]
          Length = 138

 Score = 54.7 bits (130), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 13/114 (11%)

Query: 12  RMSQLVTANGFAFVAGQVPNNAG------APIPQQASEVLAKIDAQLQAQGIGRE--RIV 63
             S + T NG AF++GQ+P +A       A    QA +VLA ++A L   G+G E  +++
Sbjct: 29  HYSHVATGNGMAFISGQLPIDAHGNKLAEASFDVQARQVLANVEAAL--AGVGSEIGKLL 86

Query: 64  SANVWLSSPEHFAAFNAVWDAWVPAGHA-PTRACVQALLMAPGLDVEVAVIAAL 116
              V+L+   H+ AFN ++ AW  AG A P RA V    +  GL +EV   A L
Sbjct: 87  QVRVYLTDVAHWPAFNDLYAAW--AGSARPARAVVPVPALHFGLQIEVEATALL 138


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 385,219
Number of extensions: 14558
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 3
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 124 (52.4 bits)