BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1166.p
         (205 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310692|ref|YP_003774784.1| transcription regulator protein...   255   2e-69
gi|300309821|ref|YP_003773913.1| transcription regulator protein...    64   1e-11

>gi|300310692|ref|YP_003774784.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  255 bits (651), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 144/202 (71%), Positives = 168/202 (83%)

Query: 4   RADKTRAILLDAALAAFARRGVRATTLEHVAASADFTRGAVYWHFPDKTALVKAVFEELV 63
           RAD+TRA+LLDAALAAFARRGVRATTLEHVAASA  TRGAVYWHFPDK ALV AVFEE+ 
Sbjct: 3   RADQTRALLLDAALAAFARRGVRATTLEHVAASAALTRGAVYWHFPDKKALVTAVFEEMR 62

Query: 64  WPFDLGPDLAVYRQSEQPMLLLREVLWLKMLDCLRDVRQRRRMEVVLRYRGTPELPEELA 123
           WPF+LG DL+ Y   + P+ LLREVLWL+M   + D+RQRRRME+VLRYRGTPELPEEL+
Sbjct: 63  WPFELGEDLSAYHACDNPLGLLREVLWLQMRQGVADLRQRRRMEIVLRYRGTPELPEELS 122

Query: 124 ARLDTLSLQALDHLTAVLNIAYERGELRRGLTPIDVARCLVAACMGVIAEHMEDPQARLE 183
            RL+T+ L+A+  LTAV+NIAYERG LRRGLTPIDVAR +VAA +GVIAE+M+D QA  E
Sbjct: 123 LRLETMILRAVSELTAVINIAYERGTLRRGLTPIDVARSIVAASLGVIAENMDDAQAAPE 182

Query: 184 HSFHLAPLLVLQGASAMGGEEA 205
             F+L P LVL GAS +  E+A
Sbjct: 183 GYFYLTPGLVLVGASTLALEDA 204


>gi|300309821|ref|YP_003773913.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 211

 Score = 63.5 bits (153), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 2/145 (1%)

Query: 7   KTRAILLDAALAAFARRGVRATTLEHVAASADFTRGAVYWHFPDKTALVKAVFEELVWPF 66
           +TR+ +LDAA   F  RGV  T+L  VA +A+ TRGA+YWHF +K+ L  A+ E +  P 
Sbjct: 11  ETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFDAMCERVRLPM 70

Query: 67  DLGPDLAVYRQSEQPM-LLLREVLWLKMLDCLRDVRQRRRMEVVLRYRGTPELPEELAAR 125
           +   +     Q E P+   LR  +++  +    D R RR  +++       +  + +  R
Sbjct: 71  EAVLEENASPQVEDPLGQFLRSGVYVLTM-AATDERCRRVFDIIFNKCEFADAHDPILIR 129

Query: 126 LDTLSLQALDHLTAVLNIAYERGEL 150
                +  +  L  +L  A  RG+L
Sbjct: 130 QRECHVDGMLRLEQILGNAVARGQL 154


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 595,052
Number of extensions: 23111
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 205
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,236,335
Effective search space: 153305540
Effective search space used: 153305540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)