BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1164.p (1049 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump pr... 1978 0.0 gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump pr... 1242 0.0 gi|300309819|ref|YP_003773911.1| acriflavin resistance transmemb... 1174 0.0 gi|300313244|ref|YP_003777336.1| multidrug efflux system transme... 1000 0.0 gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump pr... 680 0.0 >gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1049 Score = 1978 bits (5124), Expect = 0.0, Method: Compositional matrix adjust. Identities = 986/1049 (93%), Positives = 1021/1049 (97%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGAISVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 MARFFIDRPIFAWVLAIIVMLAG +SVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT Sbjct: 1 MARFFIDRPIFAWVLAIIVMLAGIVSVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 Query: 61 VTQVIEQKMKGLDRLSYMASTSESSGTVTITLTFENGTNPDTAQVQVQNKLSLATPLLPT 120 VTQ+IEQKMKGLDRLSYMASTSESSG+VTITLTFENGTNPDTAQVQVQNKLSLATPLLP+ Sbjct: 61 VTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQNKLSLATPLLPS 120 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVQGVGDTTLFGS 180 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRV+GVGDTTLFGS Sbjct: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVEGVGDTTLFGS 180 Query: 181 QYAMRIWLDPNKLNSYALTPLDVKNAIQAQNVQVSSGQLGGLPAVENQQINATITAQTRL 240 QYAMRIWLDPNKLNSY LTPLDVKNAIQAQN QVSSGQLGGLPA ENQQINATITAQTRL Sbjct: 181 QYAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQQINATITAQTRL 240 Query: 241 RTADQFRNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 RTADQF+NIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL Sbjct: 241 RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 Query: 301 DTVKAIDARVAQLEKFFPAGMKVQKPYDTTPFVRISIEEVVRTLVEAVVLVFLVMYLFLQ 360 DTVKAID RVA+LEKFFP GMKVQKPYDTTPFVRISIEEVVRTL+EAVVLVFLVMYLFLQ Sbjct: 301 DTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 NFRATLIPTIAVPVVLLGTFGVLA FGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 Query: 421 SEDGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 SE+GLPPK+ATRKSMGQI+GALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL Sbjct: 421 SEEGLPPKQATRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 Query: 481 SVLVAIVLTPALCATLLKPAAKGHALATSGFFGWFNRQFDRGNRRYQGVVRHMLGRGWRY 540 SVLVA+VLTPALCATLLKPAAKGHALAT+GFFGWFNRQFDR N RYQG+VRHMLGRGWRY Sbjct: 481 SVLVALVLTPALCATLLKPAAKGHALATTGFFGWFNRQFDRSNIRYQGIVRHMLGRGWRY 540 Query: 541 MAAYAVLLALVVTGFMKLPVGFLPDEDQGSLFAIMQLPAGATKARTDDVIHQVEHHFLVD 600 MAAYAVLLALVV GFMKLPVGFLPDEDQG+LFAIMQLP+GATKARTD+VI QVE HFLVD Sbjct: 541 MAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIMQLPSGATKARTDEVIRQVEQHFLVD 600 Query: 601 QKDAVAGVFSVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVVNKAGAAFAKIRDA 660 QK+AV+GVF+VSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDV KAGAAFA IRDA Sbjct: 601 QKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVAAKAGAAFANIRDA 660 Query: 661 KVFAFAPPAVAELGNATGFDLMLKDEANLGHAALMQARNQLLATLTKDKRLVAVRPNGLE 720 +VFAFAPPAV+ELGNATGFDLMLKDEANLGHAALMQARNQLL L +DKRLVAVRPNGLE Sbjct: 661 RVFAFAPPAVSELGNATGFDLMLKDEANLGHAALMQARNQLLGELMQDKRLVAVRPNGLE 720 Query: 721 DTPEFRLQVDTEKAGALGVSMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQADAQYRML 780 DTPEFRL VDT+KAGALGV+MSDINDTIATAWGSSYVNDFIDKGRVKKVMLQ DAQYRML Sbjct: 721 DTPEFRLSVDTDKAGALGVAMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQGDAQYRML 780 Query: 781 PSDLDRWYVRNSAGTMVPFSAFSSAHWTSGSPRLERYNGVPSMEILGMALPGAASSGQAM 840 PSD+DRWYVRNSAGTMVPFSAFS+A WTSGSPRLERYNGVPSMEILGMALPGAASSG+AM Sbjct: 781 PSDVDRWYVRNSAGTMVPFSAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAM 840 Query: 841 DIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYSISILIVFLALAALYESWAVPFSV 900 IVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILY +SILIVFLALAALYESWAVPFSV Sbjct: 841 AIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSV 900 Query: 901 ILVVPLGVFGALVGAILTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKNLVE 960 ILVVPLGVFGAL+GA+LTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGK+LVE Sbjct: 901 ILVVPLGVFGALLGAMLTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKSLVE 960 Query: 961 ATMEAVRMRLRPILMTSMAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTLLAIFFV 1020 ATMEAVRMRLRPILMTS+AFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGT+LA+FFV Sbjct: 961 ATMEAVRMRLRPILMTSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFV 1020 Query: 1021 PLFFVIIMKLFARKPHAAPQGQPAISTEH 1049 PLFFVIIM LF RKP APQGQPAIS EH Sbjct: 1021 PLFFVIIMTLFGRKPADAPQGQPAISPEH 1049 >gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1051 Score = 1242 bits (3213), Expect = 0.0, Method: Compositional matrix adjust. Identities = 618/1042 (59%), Positives = 785/1042 (75%), Gaps = 5/1042 (0%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGAISVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 MARFFIDRPIFAWV+AII+ML G +S+ +L + QYP IAPP + I A Y GASAKTLED+ Sbjct: 1 MARFFIDRPIFAWVIAIIIMLGGMMSIRSLSLEQYPDIAPPKVNIKATYTGASAKTLEDS 60 Query: 61 VTQVIEQKMKGLDRLSYMASTSESSGTVTITLTFENGTNPDTAQVQVQNKLSLATPLLPT 120 VTQVIEQ+MKGLD L YM+++S S+G+ T++LTF GTNPD AQ+QVQNKL T LP Sbjct: 61 VTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQVTARLPQ 120 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVQGVGDTTLFGS 180 VQ G+TVTK++T+ L VL+ TS+D ++ D+ D++++ + D ISRV+GVGD T FG+ Sbjct: 121 AVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVGDVTAFGT 180 Query: 181 QYAMRIWLDPNKLNSYALTPLDVKNAIQAQNVQVSSGQLGGLPAVENQQINATITAQTRL 240 YAMRIW+DP KL YAL P D+ +A+QAQN +VS+G++G LPA QQINATITA+++L Sbjct: 181 NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINATITARSKL 240 Query: 241 RTADQFRNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 T D+FRNI++++ G+ VKL DVAR+ELG ESY + NGKP++ LAI+LATGANAL Sbjct: 241 TTPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVASQQNGKPSSALAIQLATGANAL 300 Query: 301 DTVKAIDARVAQLEKFFPAGMKVQK--PYDTTPFVRISIEEVVRTLVEAVVLVFLVMYLF 358 T A+ ++A+LE +FPA MK++ YDTTPFVR+S+EEVV+TL+EA+VLV L+MYLF Sbjct: 301 ATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLF 360 Query: 359 LQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENVER 418 LQN RAT IP I VPVVLLGTFG+LA FG++INTLTMF MVLAIGLLVDDAIVVVENVER Sbjct: 361 LQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENVER 420 Query: 419 VMSEDGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAM 478 +MSE+ L PKEATRKSM +ITGALVG+A+VL+AVF+PMAFF GSTGVIYRQFSITIVSAM Sbjct: 421 LMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 480 Query: 479 TLSVLVAIVLTPALCATLLKPAAKGHALATSGFFGWFNRQFDRGNRRYQGVVRHMLGRGW 538 LSV+VA+ LTPALCATLLKP A GH + FF WFNR FDR RYQG V +L RG Sbjct: 481 ALSVMVALTLTPALCATLLKPHAGGH-VQQGRFFTWFNRSFDRSATRYQGGVAGLLKRGK 539 Query: 539 RYMAAYAVLLALVVTGFMKLPVGFLPDEDQGSLFAIMQLPAGATKARTDDVIHQVEHHFL 598 R + YA++ + FM+LP FLP+EDQG L A +QLP GAT +T V+ V+ +F+ Sbjct: 540 RGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLPTGATAEQTATVVKTVQEYFM 599 Query: 599 VDQKDAVAGVFSVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVVNKAGAAFAKIR 658 ++ ++V V ++ G G+ QN AFI+LK W++R G G S +++V +A A +KIR Sbjct: 600 -NKPESVESVLAIVGAGVGGNSQNGARAFIRLKDWEQRTGAGQSASELVRRANADLSKIR 658 Query: 659 DAKVFAFAPPAVAELGNATGFDLMLKDEANLGHAALMQARNQLLATLTKDKRLVAVRPNG 718 A+VF PPAV LG ++GFDL LKD +GH AL+QAR+Q L + L VR G Sbjct: 659 GARVFLMNPPAVRGLGQSSGFDLELKDVGGVGHDALLQARDQFLQLARSNALLANVRTTG 718 Query: 719 LEDTPEFRLQVDTEKAGALGVSMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQADAQYR 778 L+DTP+ R+ +D KA AL ++ SDIN T+ATA G +YVNDF+ GRVKKV +Q D+ +R Sbjct: 719 LDDTPQLRVAIDDRKADALSIATSDINATLATAMGGTYVNDFLSNGRVKKVYVQGDSAFR 778 Query: 779 MLPSDLDRWYVRNSAGTMVPFSAFSSAHWTSGSPRLERYNGVPSMEILGMALPGAASSGQ 838 M DL+RWYVRN+A MVPF+AF S+ WT G LERYNGV S EI+G G SSG Sbjct: 779 MQADDLNRWYVRNAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAG-VSSGT 837 Query: 839 AMDIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYSISILIVFLALAALYESWAVPF 898 AM VE +A++P GIG+EWTG S QE+ S + +LY+ISIL VFL LAALYESW+VPF Sbjct: 838 AMAEVEKLVAQLPAGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPF 897 Query: 899 SVILVVPLGVFGALVGAILTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKNL 958 +VIL VPLG+ G ++ + NDVYFQVGLLTT+GL+ KNAILIVEFAK L+E GK+L Sbjct: 898 AVILAVPLGIIGTVLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAKQLHESGKSL 957 Query: 959 VEATMEAVRMRLRPILMTSMAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTLLAIF 1018 EAT+EAV++RLRPILMTS+AF+ GVLP+ + SGAG+ ++ A+GT V+GGMLS TLL IF Sbjct: 958 WEATLEAVQLRLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIF 1017 Query: 1019 FVPLFFVIIMKLFARKPHAAPQ 1040 FVPLF+ +I R+ P+ Sbjct: 1018 FVPLFYYLIGAWLDRRAARKPR 1039 >gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1048 Score = 1174 bits (3038), Expect = 0.0, Method: Compositional matrix adjust. Identities = 571/1031 (55%), Positives = 751/1031 (72%), Gaps = 4/1031 (0%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGAISVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 M +FFIDRP+FAWVLAI +MLAGA+++ LP++QYP IAPP I +TA YPGA+A+TL+D+ Sbjct: 1 MGKFFIDRPVFAWVLAIFIMLAGALAITGLPVSQYPNIAPPTIVVTATYPGATAQTLDDS 60 Query: 61 VTQVIEQKMKGLDRLSYMASTSESSGTVTITLTFENGTNPDTAQVQVQNKLSLATPLLPT 120 VT +IEQ+M G D L Y+ S S+++G V IT+TF TNPD A V VQN+L LP Sbjct: 61 VTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKRVEARLPA 120 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVQGVGDTTLFGS 180 V QQG+ VTKS +NFL + +S DG + L DY++ NV + I RV GVG LFG+ Sbjct: 121 AVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVGQAQLFGT 180 Query: 181 QYAMRIWLDPNKLNSYALTPLDVKNAIQAQNVQVSSGQLGGLPAVENQQINATITAQTRL 240 + AMRIW+DPNKL LTP DV AIQAQN V+ G LG LP+ QQI AT+ +L Sbjct: 181 ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAATVVVNGQL 240 Query: 241 RTADQFRNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 + +QF NI+LR GA V+LRDVAR+E+G +SY + GR +GKP++ + ++L+ ANAL Sbjct: 241 TSPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSGRLDGKPSSFIGVQLSPTANAL 300 Query: 301 DTVKAIDARVAQLEKFFPAGMKVQKPYDTTPFVRISIEEVVRTLVEAVVLVFLVMYLFLQ 360 T A+ ++ +L K+FP G+K PYDT+ FV+ISIEEVV+TL+EA+VLVFLVM+LFLQ Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N R T+IPTI VPV LLGTF L FGF+IN LTMF MVLAIG+LVDDAIVVVENVER+M Sbjct: 361 NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENVERIM 420 Query: 421 SEDGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 SE+GL P +ATRK+MGQI+GAL+G+ LVL AVF+PMAFF G+ G IYRQFS+++V++M Sbjct: 421 SEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMVASMVF 480 Query: 481 SVLVAIVLTPALCATLLKPAAKGHALATSGFFGWFNRQFDRGNRRYQGVVRHMLGRGWRY 540 SVL+A LTPALCAT+LKP KGH GFFGWFNR+F+ YQG++ ML + RY Sbjct: 481 SVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKFNSTASGYQGIIGGMLNKAGRY 540 Query: 541 MAAYAVLLALVVTGFMKLPVGFLPDEDQGSLFAIMQLPAGATKARTDDVIHQVEHHFLVD 600 M Y +++A V +++LP FLP+EDQG + +QLP GA+ +RT V+ Q+E ++L D Sbjct: 541 MIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPPGASTSRTTAVVKQIEEYYLKD 600 Query: 601 QKDAVAGVFSVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVVNKAGAAFAKIRDA 660 AV +V G+SF+G+GQN F LK W +R S + KA AF++I+DA Sbjct: 601 --PAVEHAIAVLGYSFSGNGQNAALVFTPLKDWSQRD-KSQSADAIAGKAFGAFSQIKDA 657 Query: 661 KVFAFAPPAVAELGNATGFDLMLKDEANLGHAALMQARNQLLATLTKDKRLVAVRPNGLE 720 VF PP + ELGNATGF L+D A LGH AL+QARNQ+L ++ K L VRP GLE Sbjct: 658 IVFPLNPPPIPELGNATGFTFRLQDRAGLGHTALVQARNQILGMASQSKVLAGVRPEGLE 717 Query: 721 DTPEFRLQVDTEKAGALGVSMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQADAQYRML 780 D P+ +L +D +KA ALGV S IN ++TA GSSYVNDF + GR ++V++QADA+ R+ Sbjct: 718 DAPQLQLDIDRDKANALGVPFSTINSVLSTALGSSYVNDFPNLGRQQRVIVQADAKRRLQ 777 Query: 781 PSDLDRWYVRNSAGTMVPFSAFSSAHWTSGSPRLERYNGVPSMEILGMALPGAASSGQAM 840 P DL Y RNS+GTMVPFSAF +A W +G +L RYNG P+M+I G A PG S+G+AM Sbjct: 778 PEDLTNLYARNSSGTMVPFSAFVTAKWINGPVQLIRYNGYPAMKIAGGAAPG-RSTGEAM 836 Query: 841 DIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYSISILIVFLALAALYESWAVPFSV 900 +E+ +AK+PPG G+EWTG SL+EK S + LY++S++ VFL LAALYES ++P +V Sbjct: 837 AEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYESTSIPLAV 896 Query: 901 ILVVPLGVFGALVGAILTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKNLVE 960 +LVVPLG+ GAL+G L NDVYF+VG++ +GL+ KNAILI+EFAKDL GK L+E Sbjct: 897 MLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKDLQAQGKGLIE 956 Query: 961 ATMEAVRMRLRPILMTSMAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTLLAIFFV 1020 AT+EAV +R RPI+MTS+AFILGVLP+ + SGAG+ +Q A+GT V+GGM++ T+LA+F V Sbjct: 957 ATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITATVLAVFLV 1016 Query: 1021 PLFFVIIMKLF 1031 P+FFV++ K+F Sbjct: 1017 PIFFVVVRKIF 1027 >gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 1033 Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/1037 (50%), Positives = 704/1037 (67%), Gaps = 9/1037 (0%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGAISVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 M RFFIDRPIFAWV+A+ ++L G I++ LPIA+YP++APP ++I A YPGA+ +T+ D Sbjct: 1 MPRFFIDRPIFAWVVALFIVLFGVIAMSQLPIARYPSVAPPTVSINATYPGATPQTMNDG 60 Query: 61 VTQVIEQKMKGLDRLSYMASTSESSGTVTITLTFENGTNPDTAQVQVQNKLSLATPLLPT 120 V +IE+++ G+ L Y S++++SGT I++TF+ GT+P+ AQV VQNKL LP Sbjct: 61 VISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKAIEARLPQ 120 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVQGVGDTTLFGS 180 V+Q G+TV +A++FL +++ TS DG L+DY+A N+ + + R++GVG LFG+ Sbjct: 121 TVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVGRVQLFGA 180 Query: 181 QYAMRIWLDPNKLNSYALTPLDVKNAIQAQNVQVSSGQLGGLPAVENQQINATITAQTRL 240 + AMRIWLDP KLN+Y LT D+ AI QN Q++ G+LG PAV QQI +T Q +L Sbjct: 181 EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAMPLTVQGQL 240 Query: 241 RTADQFRNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANAL 300 ++ QF IVL+ G++V L DVAR+ELG++SY R NGKPA A++L+ GANA+ Sbjct: 241 QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAV 300 Query: 301 DTVKAIDARVAQLEKFFPAGMKVQKPYDTTPFVRISIEEVVRTLVEAVVLVFLVMYLFLQ 360 T AI AR+ +L P GM PY+T PFV+ISI++VV+TL+EA+VLVFLVMYLFLQ Sbjct: 301 RTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQ 360 Query: 361 NFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420 N R T+IP I P+ LLGT V+ G+++N LTMF MVLAIG++VDDAIVVVENVER+M Sbjct: 361 NVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENVERIM 420 Query: 421 SEDGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 480 + +GL P+EAT K+MG+ITGA++G+ LVL AVF+PMA GS GVIYRQFS+ + ++ Sbjct: 421 AHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILF 480 Query: 481 SVLVAIVLTPALCATLLKPAAKGHALATSGFFGWFNRQFDRGNRRYQGVVRHMLGRGWRY 540 S +A+ LTPALCATLL+P GH GFFG FNR F+R RY+ + ++ RG R Sbjct: 481 SAFLALSLTPALCATLLRPVPAGHH-DKRGFFGAFNRAFNRLTARYESALGRLIARGLRM 539 Query: 541 MAAYAVLLALVVTGFMKLPVGFLPDEDQGSLFAIMQLPAGATKARTDDVIHQVEHHFLVD 600 M YA L L+V G LP FLP+EDQG QLPA AT RT + Q E + + Sbjct: 540 MLVYAALSGLLVVGMQALPSAFLPEEDQGYFMTSFQLPADATTERTARAVDQFERY--LK 597 Query: 601 QKDAVAGVFSVSGFSFAGSGQNMGFAFIKLKPWDERKGPGLSVTDVVNKAGAAFAKIRDA 660 ++ + SV GF F+GSG N AF +LK W ERKG S + + A + + D Sbjct: 598 GREDIGANLSVLGFGFSGSGPNAAMAFTELKDWKERKG-STSAAEAMAAQAAMESGV-DG 655 Query: 661 KVFAFAPPAVAELGNATGFDLMLKDEANLGHAALMQARNQLLATLTKDKRLVAVRPNGLE 720 V + PPA+ ELGN++GF + L+D AN G+AAL A QLLA K ++L V +GL Sbjct: 656 MVMSLLPPAIEELGNSSGFAMRLQDRANQGYAALKAAEAQLLALAAKSRKLSGVYSDGLP 715 Query: 721 DTPEFRLQVDTEKAGALGVSMSDINDTIATAWGSSYVNDFIDKGRVKKVMLQADAQYRML 780 +L++D KA ALGVS S I+DT++ A GS YVNDF + GR+++V+LQA A RM Sbjct: 716 AGASVQLEIDRHKAAALGVSFSSISDTLSAAMGSFYVNDFPNAGRMQQVILQAQASARMQ 775 Query: 781 PSDLDRWYVRNSAGTMVPFSAFSSAHWTSGSPRLERYNGVPSMEILGMALPGAASSGQAM 840 D+ + YVRN +G MVP + A W +L+RY G P++ I G A PG A SG+AM Sbjct: 776 LEDVMKLYVRNQSGGMVPLAELVKASWREAPTQLQRYQGFPAVRISGSAAPGVA-SGEAM 834 Query: 841 DIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGILYSISILIVFLALAALYESWAVPFSV 900 +E ++PPG WTG SLQE+ S+ + +L ++S+L+VFL LAALYESW++P SV Sbjct: 835 AEMERLAQQLPPGFAVAWTGQSLQERLSAAQAPMLMALSMLVVFLVLAALYESWSIPLSV 894 Query: 901 ILVVPLGVFGALVGAILTWKMNDVYFQVGLLTTIGLACKNAILIVEFAKDLYEHGKNLVE 960 +LVVPLG+ GA+ IL NDV+F+VG++T IGL+ KNAILIVEFA+ L G LVE Sbjct: 895 MLVVPLGLVGAVAAVILRDMPNDVFFKVGMITVIGLSAKNAILIVEFARQLRSEGMGLVE 954 Query: 961 ATMEAVRMRLRPILMTSMAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTLLAIFFV 1020 A ++A +RLRPILMTS+AF LGV+P++L SGA A Q A+GT V GGM+S T+LA+ FV Sbjct: 955 AAIKASVLRLRPILMTSLAFALGVVPLMLASGASAETQRAIGTGVFGGMVSATVLAVLFV 1014 Query: 1021 PLFFVIIM---KLFARK 1034 P+FFV+++ + ARK Sbjct: 1015 PVFFVLVLGCAQRLARK 1031 >gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae SmR1] Length = 1071 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/1070 (40%), Positives = 639/1070 (59%), Gaps = 34/1070 (3%) Query: 1 MARFFIDRPIFAWVLAIIVMLAGAISVLTLPIAQYPAIAPPAIAITANYPGASAKTLEDT 60 +++FFIDRPIFA VL+++++L G +++L LPI++YP + PP++ + A YPGA+ K + +T Sbjct: 3 ISKFFIDRPIFAGVLSVLLLLGGVLAMLQLPISEYPEVVPPSVVVRAQYPGANPKVIAET 62 Query: 61 VTQVIEQKMKGLDRLSYMASTSESSGTVTITLTFENGTNPDTAQVQVQNKLSLATPLLPT 120 V +E+++ G++ + YM S + S G +TIT+ F G +PD AQ VQN++S A P LP Sbjct: 63 VASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQNRVSQALPRLPE 122 Query: 121 EVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRVQGVGDTTLFGS 180 +VQ+ G+T KS+ V+ TS D + L +Y NV+D ++R+QGVG+ LFGS Sbjct: 123 DVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLARIQGVGEVGLFGS 182 Query: 181 -QYAMRIWLDPNKLNSYALTPLDVKNAIQAQNVQVSSGQLGGLPAVENQQINATITAQTR 239 YAMR+WLDPNK+ LT DV AI+ QNVQV++G +G P+ + ++ AQ R Sbjct: 183 GNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPETPLQLSVNAQGR 242 Query: 240 LRTADQFRNIVLRTLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANA 299 L+T +FR+I+L+ GA +L DVAR+EL + Y + KPA + I A GANA Sbjct: 243 LKTEGEFRDIILKASPDGATTRLGDVARVELAASEYGLRSLLDNKPAVAIPIFQAPGANA 302 Query: 300 LDTVKAIDARVAQLEKFFPAGMKVQKPYDTTPFVRISIEEVVRTLVEAVVLVFLVMYLFL 359 LD + A + +L FP+ + YD T FVR SIE VV TL+EA+ LV +V+ +FL Sbjct: 303 LDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVRASIEAVVHTLLEAIALVVIVVIIFL 362 Query: 360 QNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENVERV 419 Q +RA++IP +AVPV ++GTF ++ FG+TIN L++F MVLAIG++VDDAIVVVENVER Sbjct: 363 QTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERN 422 Query: 420 MSEDGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMT 479 + GL P++AT ++M +++G ++ +AL L AVFVP+AF +G TG Y+QF++TI Sbjct: 423 IGA-GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTI----A 477 Query: 480 LSVLVAIVLTPALCATLLKPAAKGHALATSGFFGWFNRQFDR---------------GNR 524 +S +++ + L L KGH W RQ DR + Sbjct: 478 ISTVISAFNSLTLSPALAALLLKGHGDKPD----WLTRQMDRFLGGFFIRFNRFFNRASD 533 Query: 525 RYQGVVRHMLGRGWRYMAAYAVLLALVVTGFMKLPVGFLPDEDQGSLFAIMQLPAGATKA 584 Y V ++ R M Y +LLA + +P GF+P +D+ L A QLP GA+ Sbjct: 534 NYGHGVTGVIKRKGATMGVYVLLLAATLGISYIVPGGFVPGQDKQYLVAFAQLPNGASID 593 Query: 585 RTDDVIHQVEHHFLVDQKDAVAGVF---SVSGFSFAGSGQNMGFAFIKLKPWDERKGPGL 641 R+++V+ ++ L + A A F S++GF+ + S G F+ LKP++ERK L Sbjct: 594 RSEEVMRKMSDIMLKEPGVASAIAFPGLSINGFTNSSSA---GIVFVGLKPFEERKSKDL 650 Query: 642 SVTDVVNKAGAAFAKIRDAKVFAFAPPAVAELGNATGFDLMLKDEANLGHAALMQARNQL 701 S + F I++A F PP V LG GF + ++D LG+A L +A Sbjct: 651 SGNAIAASLNKKFGSIKEAFTAVFPPPPVMGLGTLGGFKMQIEDRDALGYAELDKAAQAF 710 Query: 702 LATLTKDKRLVAVRPNGLEDTPEFRLQVDTEKAGALGVSMSDINDTIATAWGSSYVNDFI 761 + K+ L + + + P+ +++D KA LG+ ++D+ +T+ GS YVNDF Sbjct: 711 MKAAAKEPALGPMFSSYQINVPQLDVELDRVKAKQLGIPVTDVFNTMQIYLGSLYVNDFN 770 Query: 762 DKGRVKKVMLQADAQYRMLPSDLDRWYVRNSAGTMVPFSAFSSAHWTSGSPRLERYNGVP 821 GRV +V QADA +R D+ + RN AG MVP S+ T G + RYNG Sbjct: 771 RFGRVYQVRAQADAPFRAKAEDIAQLKTRNDAGEMVPLSSVVKVKQTFGPEMVVRYNGYT 830 Query: 822 SMEILGMALPGAASSGQAMDIVEAALAKMPPGIGYEWTGLSLQEKASSGKTGI-LYSISI 880 + +I G PG +S A A +P GI +EWT L+ Q K +G G+ ++ IS+ Sbjct: 831 AADINGGPAPGYSSDQAQAAAERVAAATLPRGIKFEWTDLTYQ-KILAGNAGVWVFPISV 889 Query: 881 LIVFLALAALYESWAVPFSVILVVPLGVFGALVGAILTWKMNDVYFQVGLLTTIGLACKN 940 L+VFL LAALYES +P +VIL+VP+ + AL G LT N+++ Q+GL+ +GL+ KN Sbjct: 890 LLVFLVLAALYESLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKN 949 Query: 941 AILIVEFAKDLYEHGKNLVEATMEAVRMRLRPILMTSMAFILGVLPMVLGSGAGAGAQHA 1000 AILIVEFA++L G+ V+A +EA R+RLRPILMTS+AFI+GV+P+V SGAG+ +HA Sbjct: 950 AILIVEFARELEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHA 1009 Query: 1001 LGTAVIGGMLSGTLLAIFFVPLFFVIIMKLFARKPHAAPQGQ-PAISTEH 1049 +G AV GML TL +F P+F+V++ + R H+A + P + H Sbjct: 1010 MGIAVFFGMLGVTLFGLFLTPVFYVLLRTIDRRALHSASHHEAPMTAGTH 1059 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.135 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,934,975 Number of extensions: 117475 Number of successful extensions: 597 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 510 Number of HSP's successfully gapped: 15 Length of query: 1049 Length of database: 1,619,870 Length adjustment: 95 Effective length of query: 954 Effective length of database: 1,170,045 Effective search space: 1116222930 Effective search space used: 1116222930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 136 (57.0 bits)