BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1161.p (832 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion s... 1278 0.0 gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspiri... 1182 0.0 gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspiri... 372 e-104 gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspiri... 336 4e-93 gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion s... 295 1e-80 >gi|300313606|ref|YP_003777698.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 886 Score = 1278 bits (3308), Expect = 0.0, Method: Compositional matrix adjust. Identities = 605/806 (75%), Positives = 689/806 (85%) Query: 9 SSRSQARIAQHDRLLKLDTPLEEDLLLPQRLVATDHLSHGYDYTIDLLATRSDLDLKPLI 68 S RSQARI QH RLL+LD+ L D+LLPQRLVAT+ L+ GY+ TIDLLAT + + L+ LI Sbjct: 9 SRRSQARITQHRRLLQLDSSLGPDILLPQRLVATERLNDGYEVTIDLLATHTGIALEQLI 68 Query: 69 AQAVTLWIRQDTRDYLPIHGYVHTAERLGSDGELAFCQLGIAPWLHFLRFRKDARIWQDK 128 AQ VTLWIRQ D LP+HGYVHTA+RLGSDGEL FCQL ++PWLHFLRFRKDARIWQDK Sbjct: 69 AQPVTLWIRQHDGDTLPLHGYVHTAKRLGSDGELDFCQLSLSPWLHFLRFRKDARIWQDK 128 Query: 129 TAEDILADVFDCHPQARGHYRFALERPALARSYCTQYETDWHFVQRLMEEEGWFAHHEQK 188 EDILADVF+ HPQARGHYRF LERP R YCTQYETDWHFVQRLMEEEGWFAHHEQ+ Sbjct: 129 RTEDILADVFNNHPQARGHYRFQLERPYTPRPYCTQYETDWHFVQRLMEEEGWFAHHEQR 188 Query: 189 EDGSAHVLVITDNSYSLRPLARHAIAFHGAGPQDELDKILHWRAHRHLTSSRWRSRTDDY 248 EDGS HVLVITDN+++L L + IAFHGA P+DELDKILHW A R L+S WR R+DDY Sbjct: 189 EDGSGHVLVITDNTWNLPGLPQQGIAFHGAAPRDELDKILHWSASRTLSSKGWRGRSDDY 248 Query: 249 KSPRQEKGAEEHVLPEHGQLPGQLEIYEYTGAYSHANQEQGNRQADLRVEQWESAMQRYH 308 KSP +K AEE V+PE+GQLP QLE+YEYTGAYS QEQGNRQADL+VEQWES+MQRY Sbjct: 249 KSPGMKKEAEEQVMPEYGQLPAQLEMYEYTGAYSFRLQEQGNRQADLQVEQWESSMQRYS 308 Query: 309 AISGVREIACGRWFRLDGHPEHKAAAESERQYMIIAIDWFIENNLPLSHQALDFPGSLSA 368 A+SGVR +ACGRWFRL+ HP+H+A + ERQ++I+AIDWF+ENNLPLSHQALDFPGSL Sbjct: 309 AVSGVRNLACGRWFRLEEHPQHRAEPDRERQFVILAIDWFVENNLPLSHQALDFPGSLKG 368 Query: 369 VLAQFKASIGRAQKSEAADNQHTGHCFNRFEVQRRSLPFRSERTHPKPLLHPQTAIVVGP 428 L FK SI R ++ DN+HTGHCFNRFEVQRR LPFR R H +P++ PQTAIVVGP Sbjct: 369 ALMAFKESIRRERQVAETDNEHTGHCFNRFEVQRRKLPFRPARAHARPVMLPQTAIVVGP 428 Query: 429 GGEEVYTDHLNRIKVQFHWDRINPGNEAASCWVRVSYPNAGQYWGAINVPRIGQEVIVSF 488 EEVYTDHL+RIKVQF WDRINPGNEAASCWVRVSYPNAGQYWGAI VPRIGQEVIVSF Sbjct: 429 ASEEVYTDHLDRIKVQFRWDRINPGNEAASCWVRVSYPNAGQYWGAIQVPRIGQEVIVSF 488 Query: 489 LNGDPDRPVVTGRLFNEEQRPQWHSNGRLSGLKSKEFGGDGFNQLVMDDSHQQNRLHLYS 548 LNGDPDRPVVTGRLFN EQRPQWH+NGRLSG+KSKEFGG GFNQ+VMDD+ +QNR+HLYS Sbjct: 489 LNGDPDRPVVTGRLFNAEQRPQWHTNGRLSGVKSKEFGGTGFNQMVMDDTPEQNRIHLYS 548 Query: 549 SHTHARLDLGHLVHQVGNERRDFYGAGFALKSDAYGAIITHKGLYISTYGRPGPQGAQLD 608 ++THA+L+LGHLV Q GNERR F+G+GFAL +DAYGAI+THKGLYISTYGRPG QG QLD Sbjct: 549 TNTHAQLNLGHLVSQTGNERRSFFGSGFALSTDAYGAIVTHKGLYISTYGRPGAQGTQLD 608 Query: 609 ATEATAQLKAGAALSKTLSDIAAKAGAQALPRQDGLNDFIRATQEPYDDPAQALANRFKE 668 A EAT QLK+GA LS+TLS+ AAKAGA+ L Q+ L DFI ATQ Y+DP+QA ANRF++ Sbjct: 609 AREATGQLKSGANLSRTLSETAAKAGAEPLAGQEALRDFIDATQADYEDPSQAQANRFQQ 668 Query: 669 PVLLAASPAGIGLTTPKGTHVHAGAEVTLSSGTDTHLAVGKSLLASVAEKISLFACQLGI 728 +LLAASP GIGLTTPKG H HAG E+TLSSG DT +AVGKSLLASVAEKISLFA + GI Sbjct: 669 AILLAASPDGIGLTTPKGVHTHAGGEITLSSGADTSIAVGKSLLASVAEKISLFAFKAGI 728 Query: 729 KLFAAKGKVEVQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQINSAGIT 788 KLF+AKGKVEVQAQSDDL+LIAEKVARLLS SGRVEI AK+EV+I+AGGSFI++N++GIT Sbjct: 729 KLFSAKGKVEVQAQSDDLELIAEKVARLLSASGRVEIRAKEEVLITAGGSFIRLNASGIT 788 Query: 789 QGTPGKWEAKASLHSMPGPARISYAM 814 QGT G WEAKA H+MPGP ++Y M Sbjct: 789 QGTSGAWEAKAGTHAMPGPTTLAYEM 814 >gi|300310274|ref|YP_003774366.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 928 Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/815 (67%), Positives = 666/815 (81%), Gaps = 2/815 (0%) Query: 1 MAPSLQKASSRSQARIAQHDRLLKLDTPLEEDLLLPQRLVATDHLSHGYDYTIDLLATRS 60 M L S+ + + Q R+LKLD+ L D+LLPQR+V ++ L GYDYTIDL++TR Sbjct: 13 MDNVLTTLSALADTFVGQEKRILKLDSVLGPDVLLPQRMVGSERLGRGYDYTIDLVSTRD 72 Query: 61 DLDLKPLIAQAVTLWIRQDTRDYLPIHGYVHTAERLGSDGELAFCQLGIAPWLHFLRFRK 120 D++LK LIAQ VTLW++QD DY P+HGYVHTA RLGSDG+LA Q+G+APWLHFL++RK Sbjct: 73 DIELKKLIAQPVTLWLQQDGSDYAPLHGYVHTARRLGSDGQLASFQIGMAPWLHFLKYRK 132 Query: 121 DARIWQDKTAEDILADVFDCHPQARGHYRFALERPALARSYCTQYETDWHFVQRLMEEEG 180 DARIWQD A+DILADVFD H ARG+YRF + PAL RSYCTQYETDWHFVQRLMEEEG Sbjct: 133 DARIWQDSKADDILADVFDQHAYARGNYRFEIVTPALPRSYCTQYETDWHFVQRLMEEEG 192 Query: 181 WFAHHEQKEDGSAHVLVITDNSYSLRPLARHAIAFHGAGPQDELDKILHWRAHRHLTSSR 240 W+A+HEQK DGS HVLVITDN+ +PLA +AFHGAG QDE+++ILHW A R L S+R Sbjct: 193 WYAYHEQKPDGSGHVLVITDNTDQAKPLAPEQLAFHGAGTQDEVNRILHWSASRGLASTR 252 Query: 241 WRSRTDDYKSPRQEKGAEEHVLPEHGQLPGQLEIYEYTGAYSHANQEQGNRQADLRVEQW 300 +RTDDYKSP +K +E VLPEHG LPG+LE+YEY+G YS+A Q+ G+RQA LRVEQW Sbjct: 253 LATRTDDYKSPGDQKQTQERVLPEHGALPGELEVYEYSGPYSYAKQDDGDRQARLRVEQW 312 Query: 301 ESAMQRYHAISGVREIACGRWFRLDGHPEHKAAAESERQYMIIAIDWFIENNLPLSHQAL 360 ES+M+R+ +SG R +A GRWF L HP H+ ++ + Q+M+IA++WFIENNLPLS A Sbjct: 313 ESSMKRFMGVSGARTLAAGRWFTLTDHPAHRGDSKQDSQFMLIAVEWFIENNLPLSGTAR 372 Query: 361 DFPGSLSAVLAQFKASIGRAQKSEAADNQHTGHCFNRFEVQRRSLPFRSERTHPKPLLHP 420 DFPGSL L FKAS+GR+ +A N TGHCFNRFEVQRR LP+RS H KP++HP Sbjct: 373 DFPGSLKPQLDAFKASMGRS-NDDAGGNARTGHCFNRFEVQRRKLPYRSPFDHTKPVMHP 431 Query: 421 QTAIVVGPGGEEVYTDHLNRIKVQFHWDRINPGNEAASCWVRVSYPNAGQYWGAINVPRI 480 QTA+VVGP GEEV+TD LNR+KVQF WDRINPG+E ASCWVRVSYPNAG+ WG + VPR+ Sbjct: 432 QTAVVVGPQGEEVFTDKLNRVKVQFRWDRINPGDEKASCWVRVSYPNAGENWGEVKVPRV 491 Query: 481 GQEVIVSFLNGDPDRPVVTGRLFNEEQRPQWHSNGRLSGLKSKEFGGDGFNQLVMDDSHQ 540 GQE+I+SFLNGDPDRPV TGRLFN+EQ PQWH++GRLSGLKSKEFGG+GFNQLVMDD+ Sbjct: 492 GQELIISFLNGDPDRPVATGRLFNQEQPPQWHTDGRLSGLKSKEFGGNGFNQLVMDDTTS 551 Query: 541 QNRLHLYSSHTHARLDLGHLVHQVGNERRDFYGAGFALKSDAYGAIITHKGLYISTYGRP 600 QNR+HLYSS ++A+L+LG+LV Q NERR+FYG+GFAL +D YGA++T KGLY+S+YGRP Sbjct: 552 QNRVHLYSSQSNAQLNLGYLVSQADNERRNFYGSGFALSTDDYGAVVTQKGLYLSSYGRP 611 Query: 601 GPQGAQLDATEATAQLKAGAALSKTLSDIAAKAGAQALPRQDGLNDFIRATQEPYDDPAQ 660 GPQG QLDA+EAT+ +KA A L++ LSD A++AGA+AL QD L DF+ AT++ Y Q Sbjct: 612 GPQGTQLDASEATSLMKASADLARGLSDSASRAGAEALA-QDSLKDFVDATEDKYSGQGQ 670 Query: 661 ALANRFKEPVLLAASPAGIGLTTPKGTHVHAGAEVTLSSGTDTHLAVGKSLLASVAEKIS 720 ANRFK+P+L+ A+PAGIGL T +GT VH+ E TL+SG DT +A GKSLLA+V EKIS Sbjct: 671 GSANRFKKPLLMMAAPAGIGLATDQGTQVHSAQETTLTSGKDTSIASGKSLLATVKEKIS 730 Query: 721 LFACQLGIKLFAAKGKVEVQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFI 780 LFA G+KLFAAKGKVE+QAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFI Sbjct: 731 LFAQNAGMKLFAAKGKVEIQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFI 790 Query: 781 QINSAGITQGTPGKWEAKASLHSMPGPARISYAMP 815 QINSAGITQGTPGKWEAKASLHSMPGPA ++ MP Sbjct: 791 QINSAGITQGTPGKWEAKASLHSMPGPASQNFVMP 825 >gi|300312702|ref|YP_003776794.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 824 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 266/820 (32%), Positives = 415/820 (50%), Gaps = 66/820 (8%) Query: 15 RIAQHDRLLKL-----DTPLEEDLLLPQRLVATDHLSHGYDYTIDLLATRSDLDLKPLIA 69 R QH+R+L+L D P E LL RL A++ LS Y YT++LL+ + + L ++ Sbjct: 13 RQRQHNRILQLFFINDDAPDAE--LLINRLEASEALSRDYVYTLELLSDDAHIPLDAMMG 70 Query: 70 QAVTLWIRQDTRDYLPIHGYVHTAERLGSDGELAFCQLGIAPWLHFLRFRKDARIWQDKT 129 + + + + + GYV L SDG +AF + + PWL FL R + RI+ + Sbjct: 71 KLLRVALTRADGTQRHFTGYVERFAFLRSDGGIAFYEARLVPWLAFLASRHNNRIFHHLS 130 Query: 130 AEDILADVFDCHPQARGHYRFALERPALARSYCTQY-ETDWHFVQRLMEEEGWFAHHEQK 188 E + A +F +P + L R+ Q+ E+D + + R E+ GW H+E + Sbjct: 131 LEGLSAAIFRAYPM-HARWDCQLRHGDPVRTEMFQFDESDSNLLHRRWEDAGWHYHYEHQ 189 Query: 189 EDGSAHVLVITDNSYSLRPL-ARHAIAFHGAGPQDELDKILHWRAHRHLTSSRWRSRTDD 247 DG H L ++D+S +P+ + F G E D + W A R S R + D Sbjct: 190 ADG--HQLRLSDDSTYAKPIDGTGQVPFQRHGGAIEEDGMAQWSAVRQFQPSSTRLSSYD 247 Query: 248 YKSPRQEKGAEEHVLPEHGQLPGQLEIYEYTGAYSHANQEQGNRQADLRVEQWESAMQRY 307 +K+ R ++ E L + G + Q+E YEY GAY AN++ G+RQ+ LR+E++E+A Q + Sbjct: 248 FKAARPQE-VEVPTLNKQGAVL-QVEHYEYAGAYGFANRDDGDRQSRLRMEEFEAAAQVF 305 Query: 308 HAISGVREIACGRWFRLDGHPEHKAAA---ESERQYMIIAIDWFIENNLPLSHQALDFPG 364 R + GR FRL GH AA+ + + + +II+++ NN Sbjct: 306 EGTGNCRFLQPGRTFRLTGHFSGSAASHDHDRDPELLIISVEHSATNNY----------- 354 Query: 365 SLSAVLAQFKASIGRAQKSEAADNQHTGHCFNRFEVQRRSLPFRSERTH---PKPLLHPQ 421 D++ NR R+ +P+R R++ P LL Q Sbjct: 355 --------------------LQDSETPPFYANRVRCVRKRIPWRPGRSYYSQPTALLGIQ 394 Query: 422 TAIVVGPGGEEVYTDHLNRIKVQFHWDRINPGNEAASCWVRVSYPNAGQYWGAINVPRIG 481 TA VVGP GE ++ D R+KVQFHWD+I +E +S W+RV+ +G G ++VPRIG Sbjct: 395 TATVVGPAGENLHVDEYGRVKVQFHWDQIGRNDERSSAWLRVASSWSGGEQGLVSVPRIG 454 Query: 482 QEVIVSFLNGDPDRPVVTGRLFNEEQRPQWH--SNGRLSGLKSKEFG-------GDGFNQ 532 Q VIV +L G PDRP++TG + N+ P W S LSG++S+E G Sbjct: 455 QLVIVQWLGGHPDRPIITGSVVNQLNMPPWTLPSQSALSGMRSRELAPRTGNAPGGRSGH 514 Query: 533 LVMDDSHQQNRLHLYSSHTHARLDLGHLVH-QVGNERRDFYGAGFALKSDAYGAIITHKG 591 ++ DD+H+ + + S ++L LGH+ + R+D G GF L++DA+G + +G Sbjct: 515 VLFDDTHEAIQTQVRSDAFDSQLALGHITRIERHAGRQDARGEGFELRTDAHGVVRAAQG 574 Query: 592 LYISTYGRPGPQGAQLDATEATAQLKAGAALSKTLSDIAAKAGAQ-ALPRQDGLNDFIRA 650 L +++ RP D E A+L ++LS +A + AQ Q I+A Sbjct: 575 LLLTSEPRPKAHRHTTDIGETVARLTQARGTVESLSKLAQEHEAQDKNADQYDAAQAIKA 634 Query: 651 TQEPYDDPAQALANRF---KEPVLLAASPAGIGLTTPKGTHVHAGAEVTLSSGTDTHLAV 707 + A RF EP L+ +SP+GI ++ TH+ + L++G+ LA Sbjct: 635 QNDAIKGDGAAKGGRFPELTEPHLVLSSPSGIEASSGASTHLASAEHAALTAGSHISLAA 694 Query: 708 GKSLLASVAEKISLFACQLGIKLFAAKGKVEVQAQSDDLDLIAEKVARLLSTSGRVEIHA 767 GKS AS AEK+SL A +LG KL AA G+VE+QAQ+D ++L+A+KV ++ST + + A Sbjct: 695 GKSFFASAAEKLSLLAYRLGAKLIAASGRVEIQAQNDGMELLAQKVVDIISTRDWINLKA 754 Query: 768 KDEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGP 807 K + ++ GGS + I + GIT T G A+ H GP Sbjct: 755 KKGIRLNGGGSELVI-AEGITGFTQGAHHVHAADHQTLGP 793 >gi|300310071|ref|YP_003774163.1| VGR-related protein [Herbaspirillum seropedicae SmR1] Length = 954 Score = 336 bits (862), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 267/896 (29%), Positives = 425/896 (47%), Gaps = 113/896 (12%) Query: 16 IAQHDRLLKLDTPLEEDL---LLPQRLVATDHLSHGYDYTIDLLATRSDLDLKPLIAQAV 72 ++Q+ RL+ + T L L +R + ++ + + ID L+ +DLDLK I + Sbjct: 21 LSQNARLITMTTAQSAGLPETLAVERFEGEESVNDNFRFDIDALSISTDLDLKQFIGAEI 80 Query: 73 TLWIRQDTRDYLPIHGYVHTAERLGSDGELAFCQLGIAPWLHFLRFRKDARIWQDKTAED 132 +L + Q HGY A LG+DG LA +L + +L FL R D+ ++QD T D Sbjct: 81 SLRLLQADGGTRAWHGYCTQASWLGADGGLARYRLRLESFLAFLDRRHDSFLFQDMTVTD 140 Query: 133 ILADVFDCHPQARGHYRFALERPALARSYCTQY-ETDWHFVQRLMEEEGW---FAH---- 184 I A V +PQA ++ + + R CTQY ETD+ F++R++ EG F H Sbjct: 141 IAAAVLKEYPQA--NFSLEVTQTLAKRDICTQYRETDYAFLRRILASEGLNFRFEHEQDD 198 Query: 185 ----HEQKEDGSAHVLVITDNSYSL--RPLARHAIAFHGAGPQDELDKILHWRAHRHL-- 236 H+Q + + H LVI D + P I FH + D I + A R + Sbjct: 199 ATQQHDQSQPHARHKLVIFDRNAKAPALPGGDEYIRFHRVAAMEASDAITDFAAVRSVRP 258 Query: 237 ---TSSRWRSRTDDYKSPRQEKGAEEHVLPEHGQLPGQLEIYEYTGAYSHANQEQGNRQA 293 + W + SP E+G+ + G+LP L +Y+ TG A+Q+ A Sbjct: 259 NGVALASWHP--EKLSSPSHEEGSTL----DAGELP-SLPVYDGTGQQDFADQDAAAAHA 311 Query: 294 DLRVEQWESAMQRYHAISGVREIACGRWFRLDGHPEHKAAAESERQYMIIAIDWFIENNL 353 L ++ E +R+ R++A G F L +H+ E E + ++++ NN+ Sbjct: 312 QLMLQALEMQNKRFEGAGAARQLAAGARFTL---LQHERYPEGENAFKVVSVRHAARNNV 368 Query: 354 PLSHQALDFPGSLSAVLAQFKASI-GRAQKSEAADNQHTGHCFNRFEVQRRSLPFR---- 408 +++ +LA ++ G + +E D+ G N F R S+P Sbjct: 369 S---------ANITRILAPAAGALFGGSAAAERDDDLQAGTYRNSFTAIRDSVPMVPAAI 419 Query: 409 SERTHPKPLLHPQTAIVVGPGGEEVYTDHLNRIKVQFHWDR---INPG------------ 453 +ER P QTA+V G V TD +R+KVQFHW R NPG Sbjct: 420 AERLKPTAR-GTQTALVTGAADAAVTTDRNHRVKVQFHWQRGKSPNPGGLRETGNLDDKD 478 Query: 454 -----NEAASCWVRVSYPNAGQYWGAINVPRIGQEVIVSFLNGDPDRPVVTGRLFNEEQR 508 N+++ W+RV+ +G WG+ +PR+G EV+V F+ GD DRPVV +L+N Sbjct: 479 GNANGNDSSGTWIRVAEAQSGPNWGSQFIPRVGSEVLVDFIEGDIDRPVVVAQLYNGSDA 538 Query: 509 PQWHSN--------GRLSGLKSKEFGGDGFNQLVMDDSHQQNRLHLYSSHTHARLDLGHL 560 P + + G +SG S G GFNQ V+DD+ Q R+ L SS ++L+LGHL Sbjct: 539 PPFPAGADSGINHAGSISGWHSTAHDGSGFNQWVVDDTQSQLRMRLASSTAKSQLNLGHL 598 Query: 561 VHQ--VGNERRDFYGAGFALKSDAYGAIITHKGLYISTYGRP----GPQGAQLDATEATA 614 V Q G +R + G GF L+SDA+G + +GL +ST RP G Q+DA A A Sbjct: 599 VEQADTGAQRGSYRGQGFELRSDAWGVVRGGEGLLLSTTARPLNGASVTGTQMDAAGAIA 658 Query: 615 QLKAGAALSKTLSDIAAKAGAQALPRQDGL---NDFIRATQEPYD--------------- 656 QLK +L++T+SD A + QAL L DF+ A +P D Sbjct: 659 QLKGAKSLAQTMSDSATQQ--QALSSTQALQAKTDFL-ALIDPSDQGKHPASVNGQDALK 715 Query: 657 --------DPAQALANRFKEPVLLAASPAGIGLTTPKGTHVHAGAEVTLSSGTDTHLAVG 708 D AQ + +F + +L SP+ I T+ T ++A + ++ D H + Sbjct: 716 SDGSTRNTDAAQPV-EKFAKAAVLMDSPSSINWTSNASTLLYAAENLQWTTQGDVHWSAA 774 Query: 709 KSLLASVAEKISLFACQLGIKLFAAKGKVEVQAQSDDLDLIAEKVARLLSTSGRVEIHAK 768 + A+ + S ++ GI+ FAA G V +QA +D L+++A+K + S + +EI A+ Sbjct: 775 DTASAAAGKAASFYSHDGGIQAFAANGPVSLQAHTDALEILADKDVTVTSVNDSIEIKAR 834 Query: 769 DEVMISAGGSFIQINSAGITQGTPGKWEAKASLHSMPGPARISYAMPLLPSSVWDI 824 ++++ AG + + + IT PG + K + H+ PG A +S + LP + + + Sbjct: 835 QKIVLQAGQASVTLEGGNITFACPGTFSVKGATHAFPGGASVSPDLMALPDTKYKL 890 >gi|300310083|ref|YP_003774175.1| VGR-related type VI secretion system protein [Herbaspirillum seropedicae SmR1] Length = 944 Score = 295 bits (754), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 277/912 (30%), Positives = 403/912 (44%), Gaps = 140/912 (15%) Query: 17 AQHDRLLKLDTPLEEDL----LLPQRLVATDHLS------------HGYDYTIDLLATRS 60 +Q R+++L TPL++D L+ +RL A + + GY + L+ + Sbjct: 14 SQSARVMRLHTPLDQDYGPHALMAERLQAVEQVGPGEDSSAIDQAIAGYRLQLSCLSLNA 73 Query: 61 DLDLKPLIAQAVTLWIRQDTRDYLPIHGYVHTAERLGSDGELAFCQLGIAPWLHFLRFRK 120 D+ L+ L+ Q V L + D HG+V G++G +A L I PWL FLR R+ Sbjct: 74 DISLRKLLGQPVLLELDTDG-GARAFHGHVTACRMEGANGGMARYLLTIEPWLSFLRHRR 132 Query: 121 DARIWQDKTAEDILADVF-DCHPQARGH--YRFALERPAL--ARSYCTQY-ETDWHFVQR 174 D+ ++QD +A I+ VF D Q R +R L+ + RS TQY ETD FV R Sbjct: 133 DSAVFQDMSAPAIIEAVFADYRGQGRLQPAWRLDLQDASAYAKRSLATQYQETDLAFVTR 192 Query: 175 LMEEEGWFAHHEQKEDGSA-----HVLVITDNSYSLRPLARHAIAFHGAGPQDELDKILH 229 LM EEG F + E + D ++ H +VI D++ S +P AR +AF D I Sbjct: 193 LMVEEGLFYYIEHQGDSNSASLGSHTVVIADHNGSFKPNARSTVAFAQTNAVMAQDNIDR 252 Query: 230 WRAHRHLTSSRWRSRTDDYKSPRQEKGAEEHVLPEHGQLPGQLEIYEYTGAYSHANQEQG 289 WR+ R ++ T DY+ + A E+ L + G Y + + EQ Sbjct: 253 WRSVRRWQTNAVEILTWDYRQT-AVRAASTASSGENAHDKLVLTSRDAPGQYINESPEQA 311 Query: 290 NRQADLRVEQWESAMQRYHAISGVREIACGRWFRLDGHPEHKAAAESERQYMIIAIDWFI 349 RQA +++ E + + VR G F L + + Q++++ + Sbjct: 312 QRQALNQMQAIEVRNKVFTGAGTVRSFLPGTTFTLT--GHYDHDGGDDDQFVLLRVVHQA 369 Query: 350 ENNLPLSHQALDFPGSLSAVLAQFKASIGRAQKS------EAADNQHTGHCFNRFEVQRR 403 NNL + D ++A+L Q + + S +AD Q NRFE R Sbjct: 370 HNNL-----SADLKAGVTALLGQAQLDDHDHKGSLLDTALRSADTQARPVYRNRFEAIRN 424 Query: 404 SLPFR-------SERTHPKPLLH-PQTAIVVGPGGEEVYTDHLNRIKVQFHWDRIN---- 451 +P+R ER +PKP H Q+A+VVG G+ V+TD NRI+VQFHW R Sbjct: 425 KIPYRPLLVDAQGERLYPKPQAHGQQSAVVVGAQGQAVHTDRDNRIRVQFHWQRGERSHS 484 Query: 452 -------------PGNEAASCWVRVSY---PNAGQYWGAINVPRIGQEVIVSFLNGDPDR 495 P NE A WVRV P AG WG VPR+GQEV++ F+ GD DR Sbjct: 485 GLSSPTPDDHVGAPANEQAGTWVRVLAGLAPTAGANWGGQAVPRVGQEVLIDFIEGDIDR 544 Query: 496 PVVTGRLFNEE-------------------QRPQWH--SNGR------LSGLKSKEF--- 525 PVV G L+N P W S+G LSG+K++ Sbjct: 545 PVVIGTLYNGRGVDNAQGNQAGQGAGSATGNAPAWFPGSSGAHNHAAVLSGIKTQALSAS 604 Query: 526 --GGDGFNQLVMDDSHQQNRLHLY---SSHTHA-RLDLGHLVHQVGNERRDFYGAGFALK 579 GG G+NQLV DDS Q R L +H A L+LG L Q N+R G GF LK Sbjct: 605 QSGGGGYNQLVFDDSPGQARAALQQHADAHDGASELNLGLLRQQTDNQRLATTGQGFELK 664 Query: 580 SDAYGAIITHKGLYISTYGRPGPQGAQLDATEATAQLKAGAALSKTLSDIAAK------- 632 + A+ +GL +ST AQLD T+ +QL A + L++ A K Sbjct: 665 TLYSAALRAGQGLLVSTEKSI---SAQLDMTQGLSQLSESAQKQQQLAETAQKHNARLEG 721 Query: 633 -AGAQALPRQDGLNDFI---RATQ---------EPYDDPAQALANRFKEPVLLAASPAGI 679 + A LP + + + I +ATQ + A F P L +SPAGI Sbjct: 722 ESDAAKLPAVEAMGESIEVLKATQSASTGSSGSDGQGSSATTATTAFSAPQLQLSSPAGI 781 Query: 680 GLTTPKGTHVHAGAEVTLSSGTDTHLAVGKSLLASVAEKISLFAC-----------QLGI 728 TP + AG ++++G D + +L ISLF + G+ Sbjct: 782 AAVTPASAIIAAGVTSSVTAGKDINQIAQGNLHYLSKSGISLFTYGKASNGSKPNQETGM 841 Query: 729 KLFAAKGKVEVQAQSDDLDLIAEKVARLLSTSGRVEIHAKDEVMISAGGSFIQINSAGIT 788 L AA GKV VQ+Q+ L + K + S V + K V ++A G+++++ I Sbjct: 842 ALHAAAGKVSVQSQAGQTLLTSAKQLTVASVGKDVSVAGKQHVQLAAQGAWLRLEGGNIE 901 Query: 789 QGTPGKWEAKAS 800 PG E +AS Sbjct: 902 VHGPGAMEFRAS 913 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 2,810,704 Number of extensions: 126527 Number of successful extensions: 396 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 341 Number of HSP's successfully gapped: 12 Length of query: 832 Length of database: 1,619,870 Length adjustment: 93 Effective length of query: 739 Effective length of database: 1,179,515 Effective search space: 871661585 Effective search space used: 871661585 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)