BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1155.p (249 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa... 478 e-136 gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC t... 302 1e-83 gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC t... 295 2e-81 gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC t... 236 2e-63 gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC t... 228 5e-61 >gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 249 Score = 478 bits (1230), Expect = e-136, Method: Compositional matrix adjust. Identities = 239/249 (95%), Positives = 245/249 (98%) Query: 1 MGNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPSRGA 60 MGNKVLEVR+LSAAYG V+VL+GI+LSVEQG+IVTVIGPNGAGKTTLLSAIMGVLPSRGA Sbjct: 1 MGNKVLEVRDLSAAYGKVEVLAGIDLSVEQGKIVTVIGPNGAGKTTLLSAIMGVLPSRGA 60 Query: 61 MAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQRDHAATLE 120 MAFDG IRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYR+GQRDHAATLE Sbjct: 61 MAFDGAIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRTGQRDHAATLE 120 Query: 121 EVYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 EVYTLFPRLRERRSQ AGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR Sbjct: 121 EVYTLFPRLRERRSQQAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 Query: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLGLS 240 IIAELRRRGVSILLVEQNARAALQVADYGYVLENG IRMHGPASQLAHDRRVIEAYLGLS Sbjct: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGAIRMHGPASQLAHDRRVIEAYLGLS 240 Query: 241 GKHQDKLAG 249 GKHQDKLAG Sbjct: 241 GKHQDKLAG 249 >gi|300313404|ref|YP_003777496.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 302 bits (774), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 158/245 (64%), Positives = 188/245 (76%), Gaps = 4/245 (1%) Query: 5 VLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPS----RGA 60 +LEV LSA YG V L+ LS+ G+IVTVIGPNGAGK+TLL+A+MG LPS G Sbjct: 25 LLEVSGLSARYGKVAALTDTALSLRAGQIVTVIGPNGAGKSTLLNAMMGALPSGAAASGR 84 Query: 61 MAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQRDHAATLE 120 +AF G EVEE VA G++LVPEKRELF M +EDNL+LGA++R+R+G+ + + Sbjct: 85 IAFQGEDVSQMEVEERVARGLSLVPEKRELFTTMTVEDNLLLGAYKRHRNGESGYLDQQD 144 Query: 121 EVYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 VYTLFPRL+ERR Q AGTLSGGERQMLAVGRALMAKP++LMLDEPSLGLAPLI REI Sbjct: 145 FVYTLFPRLKERRKQAAGTLSGGERQMLAVGRALMAKPQVLMLDEPSLGLAPLITREILS 204 Query: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLGLS 240 II++LR GV+ LLVEQNARAALQVADYGYVLE GEI GPA LA D R++E+YLG+ Sbjct: 205 IISQLRSTGVATLLVEQNARAALQVADYGYVLEMGEIVCAGPAGVLAEDSRIVESYLGVG 264 Query: 241 GKHQD 245 G + Sbjct: 265 GNRRS 269 >gi|300313301|ref|YP_003777393.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 295 bits (756), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/244 (61%), Positives = 188/244 (77%) Query: 1 MGNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPSRGA 60 M VL+V +L A+YG VQ L I+L +E+G I TVIGPNGAGK+TLL+AIMGVLP++G Sbjct: 1 MSELVLDVAQLRASYGKVQALHDIHLKLERGSIATVIGPNGAGKSTLLNAIMGVLPAQGT 60 Query: 61 MAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQRDHAATLE 120 + + G +E+ V AG+ LVPE+RELF+ M++EDNL+LG F+R R Q L Sbjct: 61 VRYQGRSVERWSLEQRVMAGIALVPERRELFSTMSVEDNLLLGGFRRLRLRQAQPLDQLA 120 Query: 121 EVYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFR 180 V+ LFPRL+ERRSQ AGTLSGGERQMLA+GRA+MAKP+LLMLDEPSLGLAP IV+EI Sbjct: 121 TVFDLFPRLKERRSQQAGTLSGGERQMLAIGRAMMAKPQLLMLDEPSLGLAPRIVKEILH 180 Query: 181 IIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLGLS 240 I++ELR G+S+LLVEQNARAALQ ADYGYVLE G++ + G ++QLA D +VI+AYLG Sbjct: 181 IVSELRTAGISVLLVEQNARAALQTADYGYVLELGKVTLQGESAQLAGDPQVIQAYLGFG 240 Query: 241 GKHQ 244 K Q Sbjct: 241 KKAQ 244 >gi|300311116|ref|YP_003775208.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 236 bits (601), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 125/242 (51%), Positives = 168/242 (69%), Gaps = 3/242 (1%) Query: 5 VLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVL-PSRGAMAF 63 +L + L AAYG V+VL GI++ V +G++VT+IG NGAGKTT + AI G++ P G + Sbjct: 1 MLTISNLHAAYGKVEVLHGISMEVPKGKVVTLIGSNGAGKTTTMRAISGMIKPKGGEVTL 60 Query: 64 DGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSG--QRDHAATLEE 121 G + ++ G+ PE R +FA M++ DNL+LGAF R+ + D A LE Sbjct: 61 GGKNITGLDSHKIARFGLAHSPEGRRVFATMSVTDNLLLGAFPRFTRARPKGDIAHDLER 120 Query: 122 VYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRI 181 LFPRL+ER+SQ AGTLSGGE+QMLA+ RA+M P +++LDEPS+GLAP++V E+FRI Sbjct: 121 ALELFPRLKERQSQLAGTLSGGEQQMLAMARAVMLNPEVILLDEPSMGLAPILVDEVFRI 180 Query: 182 IAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYLGLSG 241 I L+ +GV++LLVEQ A AAL VADYGYVLENG+I +HGPA +L +D V AYLG Sbjct: 181 IVRLKEQGVTMLLVEQFAAAALNVADYGYVLENGKISVHGPADKLQNDPAVKAAYLGGGA 240 Query: 242 KH 243 H Sbjct: 241 HH 242 >gi|300310524|ref|YP_003774616.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 241 Score = 228 bits (580), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 117/241 (48%), Positives = 168/241 (69%), Gaps = 5/241 (2%) Query: 1 MGNKVLEVRELSAAYGPVQVLSGINLSVEQGRIVTVIGPNGAGKTTLLSAIMGVLPS--- 57 M +L+V++LS AYG +Q + GI+L V +G +VT+IG NGAGKTT L AI G LP+ Sbjct: 1 MTTNILKVQQLSVAYGGIQAVKGIDLEVNEGELVTLIGANGAGKTTTLKAITGTLPASRV 60 Query: 58 RGAMAFDGVIRHSPEVEEMVAAGMTLVPEKRELFAEMNIEDNLMLGAFQRYRSGQRDHAA 117 G + + G + E+V + +VPE R +F M+I++NL++GA+ GQ AA Sbjct: 61 EGHIEYLGQPLKGKKSFELVKDKLAMVPEGRGVFTRMSIQENLLMGAYTSDDKGQ--IAA 118 Query: 118 TLEEVYTLFPRLRERRSQHAGTLSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVRE 177 +++ + +FPRL+ER +Q AGTLSGGE+QMLA+ RALM+ P+LL+LDEPS+GL+P++V + Sbjct: 119 DIDKWFAVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPKLLLLDEPSMGLSPIMVEK 178 Query: 178 IFRIIAELRRRGVSILLVEQNARAALQVADYGYVLENGEIRMHGPASQLAHDRRVIEAYL 237 IF +I + +G++ILLVEQNA+ AL+ A GYV+E+G I M G A Q+ D RV AYL Sbjct: 179 IFEVIRNVSAQGITILLVEQNAKLALEAAHRGYVMESGLITMQGQAQQMLDDPRVKAAYL 238 Query: 238 G 238 G Sbjct: 239 G 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 797,606 Number of extensions: 34349 Number of successful extensions: 521 Number of sequences better than 1.0e-08: 121 Number of HSP's gapped: 361 Number of HSP's successfully gapped: 136 Length of query: 249 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 166 Effective length of database: 1,226,865 Effective search space: 203659590 Effective search space used: 203659590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)