BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1139.p (515 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 881 0.0 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 492 e-140 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 468 e-133 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 429 e-121 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 366 e-102 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/515 (90%), Positives = 492/515 (95%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTL 60 MIK+IRIGSRLGAGFAVVLVFSMVVAAVGIWRL+TVA QT++MMDVPLKTERLV QWNTL Sbjct: 1 MIKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTL 60 Query: 61 LLIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVA 120 LLIAIQRTTTVVKSHDPELEAFL KEAAASSKESAQTLKDVEQLL S+EEKKMFAAINVA Sbjct: 61 LLIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVA 120 Query: 121 RKQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISADI 180 RKQFLTIRDQIYAAKKQGDAA+VEELYQKQYVGIA +TQ AMRALLDFERARID+ISA I Sbjct: 121 RKQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQI 180 Query: 181 QQDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQPMG 240 QQDA+SSQ QI LE VILLCGIAFAVLLTRSITRPV+ ALAISQRVAAGDLTSRAQ MG Sbjct: 181 QQDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMG 240 Query: 241 RDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 RDELGQLVASLQGMSERLHGVVSTVR GADSIA+ASGEIANGNLDLSARTEEQAGALE+T Sbjct: 241 RDELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQT 300 Query: 301 AASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVDII 360 AASIE+LTSSVRTNS++AHQAN+LV +AAS+AGQGG VMD+LI+TM IN+SSRKIVDII Sbjct: 301 AASIEELTSSVRTNSDNAHQANELVSTAASVAGQGGAVMDQLISTMATINDSSRKIVDII 360 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV Sbjct: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 Query: 421 EKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGVTQ 480 KV AGS LVE+AGKTMQEVVGSVQGAHTLVGEISTASR+QAEGIHQVNQAV QMDGVTQ Sbjct: 421 GKVSAGSTLVEQAGKTMQEVVGSVQGAHTLVGEISTASRQQAEGIHQVNQAVGQMDGVTQ 480 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFALQVA 515 QNAALVEQAAAAAKSLEDQAAQLKRAVAFF+LQ A Sbjct: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFSLQAA 515 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 492 bits (1267), Expect = e-140, Method: Compositional matrix adjust. Identities = 285/512 (55%), Positives = 368/512 (71%) Query: 1 MIKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTL 60 +I N+ IG RL GFA++L FS+++A +G+WRL VAQ TREMM PLKTERL+ W T Sbjct: 3 IIGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTN 62 Query: 61 LLIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVA 120 L+ I+RT + KS DP L + E AASSK S + K VE LL++ EEK +F I Sbjct: 63 LVAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGEL 122 Query: 121 RKQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISADI 180 RK +L+ RD+I AK G+ + + + +V A Q MR L+DF+R +D+ + +I Sbjct: 123 RKLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREI 182 Query: 181 QQDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQPMG 240 AA S+ I LE +ILL GI FA LT IT+P++ A+ +S+ VA GDL+S Sbjct: 183 DAIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTS 242 Query: 241 RDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 RDE GQL+ SL+ M++ L G+VS VR G D+I+ AS EIA GNLDLS+RTE+QA +L ET Sbjct: 243 RDETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAET 302 Query: 301 AASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVDII 360 A+++E+L S+VR N+++A QA+ L SA+++A QGG V+ +++ TMG IN SSRKIVDII Sbjct: 303 ASAMEELISTVRQNADNARQASQLANSASAVAEQGGGVVSQVVDTMGAINASSRKIVDII 362 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSA+AAKEIK+LI+DSV Sbjct: 363 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSV 422 Query: 421 EKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGVTQ 480 KV GS+LVE+AG TMQEVV SV+ +V EIS AS EQ GI Q+N A++QMD VTQ Sbjct: 423 GKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQ 482 Query: 481 QNAALVEQAAAAAKSLEDQAAQLKRAVAFFAL 512 QNAALVE+AAAAA S++ QA +L + V+ F L Sbjct: 483 QNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 468 bits (1203), Expect = e-133, Method: Compositional matrix adjust. Identities = 269/512 (52%), Positives = 358/512 (69%) Query: 2 IKNIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTLL 61 +KN++IG RL GF +L+ V+ A+G+WRL ++ T +M + LK ER QW+ + Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 62 LIAIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVAR 121 RT V+KS D +A+ K+ A S +Q K+VE +T EEK++F + R Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 122 KQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISADIQ 181 + R I+ K GD A+ E+ V + + + DF++ ID+ +A I Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 182 QDAASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQPMGR 241 +D S + + AL A+ ++ G A A LLTRSITRP+N A+ I++ VAAGDLTSR R Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 242 DELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEETA 301 DE G+L+A+L+ M+ L +V VR+G ++I AS EIA GNLDLSARTE QAG+LEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 302 ASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVDIIG 361 +++EQLTS+V+ N+++A QAN+L SA+ +A QGG V+D+++ATMG I+ SS+KI DIIG Sbjct: 301 SAMEQLTSTVKQNADNARQANELAASASQVATQGGAVVDQVVATMGAIHASSQKIADIIG 360 Query: 362 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSVE 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIKQLIDDSVE Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 422 KVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGVTQQ 481 KV GS+LV +AG TMQEVV SV +V EI+ AS+EQ++GI QVN A++ +D TQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 482 NAALVEQAAAAAKSLEDQAAQLKRAVAFFALQ 513 NAALVEQAAAAA+S++DQAA L AV+ F L+ Sbjct: 481 NAALVEQAAAAARSMQDQAASLTDAVSVFRLE 512 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 429 bits (1102), Expect = e-121, Method: Compositional matrix adjust. Identities = 256/482 (53%), Positives = 331/482 (68%), Gaps = 3/482 (0%) Query: 4 NIRIGSRLGAGFAVVLVFSMVVAAVGIWRLQTVAQQTREMMDVPLKTERLVGQWNTLLLI 63 N++IG RL GFAV+L + VV A+ IWRLQ +A T EMM PL ERLV W + Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 64 AIQRTTTVVKSHDPELEAFLGKEAAASSKESAQTLKDVEQLLTSDEEKKMFAAINVARKQ 123 +++RTT + KS DP L AF +AAA+S+ S + K +E L+ SD+EK +F + RK Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 124 FLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRALLDFERARIDEISADIQQD 183 ++ RD I AK +G + ++ + ++ LL +RA ID+++A IQ Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 184 AASSQWQIFALEAVILLCGIAFAVLLTRSITRPVNAALAISQRVAAGDLTSRAQPM--GR 241 S+ + AL + ++ G FA L ITRP+ A+ +++ VAAGDLT R R Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 242 -DELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGEIANGNLDLSARTEEQAGALEET 300 DE G+L+ +L M+ L +V VR G D+IA AS EIA GNLDLSARTE QAGALEET Sbjct: 246 GDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGALEET 305 Query: 301 AASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVVMDELIATMGNINESSRKIVDII 360 A+++E+LTS+V N+++A QAN L SA+S+A QGG V+ ++I+TMG+INESSRKIVDII Sbjct: 306 ASAMEELTSTVSQNADNARQANQLAASASSVAQQGGEVVSQVISTMGSINESSRKIVDII 365 Query: 361 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAAKEIKQLIDDSV 420 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AAKEIK LIDDSV Sbjct: 366 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKALIDDSV 425 Query: 421 EKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTASREQAEGIHQVNQAVSQMDGVTQ 480 KVG+GS+LV +AG TM EVV SV+ +V EIS AS EQ++GI QVN A++ MD TQ Sbjct: 426 AKVGSGSELVTRAGSTMDEVVASVRQVADIVSEISAASSEQSDGISQVNLAITDMDQTTQ 485 Query: 481 QN 482 QN Sbjct: 486 QN 487 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 366 bits (940), Expect = e-102, Method: Compositional matrix adjust. Identities = 221/415 (53%), Positives = 304/415 (73%), Gaps = 12/415 (2%) Query: 105 LTSDEEKKMFAAINVARKQFLTIRDQIYAAKKQGDAAKVEELYQKQYVGIAANTQGAMRA 164 ++ EEK ++ + F++ D+I A +QG + L + + +T+ + Sbjct: 107 ISEPEEKAIYPEVEKLIATFVSEHDKIIALSRQGKDEEARNLQRGE------STKAYRTS 160 Query: 165 LLDFER-ARIDEISADI---QQDAASSQWQIFALEAVILLCGIA--FAVLLTRSITRPVN 218 L ++ A +++ ADI Q DA +Q +++ + V G+A AV ++R I RP+ Sbjct: 161 LQQIDKLAAVNDKGADISNKQADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLE 220 Query: 219 AALAISQRVAAGDLTSRAQPMGRDELGQLVASLQGMSERLHGVVSTVRLGADSIAVASGE 278 A++++QRVA GDLT+R +P G+DE GQL+ +L+ M++ L G+V VR+G +I AS E Sbjct: 221 EAVSVAQRVAGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTE 280 Query: 279 IANGNLDLSARTEEQAGALEETAASIEQLTSSVRTNSEHAHQANDLVKSAASIAGQGGVV 338 IA+GNLDLS+RTEEQA +LEETA+++E+LTS+V+ N+++A QAN L SA+ +A QGG V Sbjct: 281 IASGNLDLSSRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAV 340 Query: 339 MDELIATMGNINESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 398 +++++ TMG+IN SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV Sbjct: 341 VNQVVDTMGSINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEV 400 Query: 399 RALAQRSAAAAKEIKQLIDDSVEKVGAGSQLVEKAGKTMQEVVGSVQGAHTLVGEISTAS 458 R+LAQRSA AAKEIK+LI+ SV +V GS+LVE+AG TM EVV SV+ +VGEIS+AS Sbjct: 401 RSLAQRSAGAAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSAS 460 Query: 459 REQAEGIHQVNQAVSQMDGVTQQNAALVEQAAAAAKSLEDQAAQLKRAVAFFALQ 513 +EQ+EGI QVN A++QMD VTQQNAALVE+AAAAA+SL++QA L + V FF L+ Sbjct: 461 QEQSEGIEQVNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLE 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.127 0.329 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,099,727 Number of extensions: 37551 Number of successful extensions: 532 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 71 Length of query: 515 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 426 Effective length of database: 1,198,455 Effective search space: 510541830 Effective search space used: 510541830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)