BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1138.p
         (258 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...   484   e-138
gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum...    76   3e-15

>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score =  484 bits (1245), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 232/258 (89%), Positives = 243/258 (94%)

Query: 1   MKKQDDVTSRPAEEISLRDHRQALVKVERRLLLRSALSLGALSMLSGCDLQDNDSVDKVL 60
           MK +DD  +   E+I L DHR ALV+V+RRL+LRSALSLGALSMLSGCDLQDNDSVDKVL
Sbjct: 1   MKDKDDKHAPKTEKILLADHRPALVQVQRRLMLRSALSLGALSMLSGCDLQDNDSVDKVL 60

Query: 61  WAMSRWNDRVQAMLFRGQKLAPTYAASQITDPFPFNAFYEEFNAPDIDGSAWRLEVSGLV 120
           WAMSRWNDRVQA+LFR  KLAPTYAASQIT PFPFNAFY+EFNAPDIDGS W+LEVSGLV
Sbjct: 61  WAMSRWNDRVQALLFRSHKLAPTYAASQITHPFPFNAFYDEFNAPDIDGSDWKLEVSGLV 120

Query: 121 SDKRPWTLERLRALPQAGQITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGFKC 180
           SDKR WTLERLRALPQAGQITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGFKC
Sbjct: 121 SDKRSWTLERLRALPQAGQITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGFKC 180

Query: 181 ADRYYSSLDMPTALHPQTILALDFGQQALPTAYGYPLKVRVPTKLGFKNPKHVVAIFVSN 240
           ADRYYSSLDMPTALHPQTILALDFG++ALPT YGYPLKVRVPTKLGFKNPKHVVAIFVSN
Sbjct: 181 ADRYYSSLDMPTALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAIFVSN 240

Query: 241 QNPGGYWEDQGYNWFSGI 258
           QNPGGYWEDQGYNWFSGI
Sbjct: 241 QNPGGYWEDQGYNWFSGI 258


>gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 322

 Score = 75.9 bits (185), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 87/198 (43%), Gaps = 33/198 (16%)

Query: 91  DPFPFNAFYE--------EFNAPDIDGSAWRLEVSGLVSDKRPWTLERLRAL----PQAG 138
           D   +N FYE          NA  +  S W +++ G V  K+P+TL+ L AL    P   
Sbjct: 77  DATSYNNFYEFGTDKADPAKNAGTLKTSPWTIDIEGEV--KKPFTLD-LDALTKLAPLEE 133

Query: 139 QITRHICIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGF-KCADR-------------- 183
           +I R  C+EGWS +  W G  L   ++       A+YV F   AD+              
Sbjct: 134 RIYRLRCVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTLADKKQMPGLSDPILNWP 193

Query: 184 YYSSLDMPTALHPQTILALDFGQQALPTAYGYPLKVRVPTKLGFKNPKHVVAIFVSNQNP 243
           Y   L +  A HP T+L L    + LP   G P+++ VP K GFK+ K +V I      P
Sbjct: 194 YREGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYGFKSAKSIVKIRFVKDEP 253

Query: 244 GGYWE---DQGYNWFSGI 258
              W     Q Y ++S +
Sbjct: 254 KTAWNLYAPQEYGFYSNV 271


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 833,995
Number of extensions: 34643
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 2
Length of query: 258
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,226,865
Effective search space: 214701375
Effective search space used: 214701375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)