BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1137.p
         (204 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310651|ref|YP_003774743.1| thiosulfate reductase cytochrom...   337   4e-94

>gi|300310651|ref|YP_003774743.1| thiosulfate reductase cytochrome
           subunit B [Herbaspirillum seropedicae SmR1]
          Length = 204

 Score =  337 bits (864), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 168/204 (82%), Positives = 180/204 (88%)

Query: 1   MPRPPVRHPLAVRIAHWLNALAVACMISSGWGIYNASPIFSFKFAPWMTLGGWLGGSIAW 60
           M RPPV HPLAVRIAHWLNA A+ACMISSGWGIYNASP+F FKFA WMTLGGWLGGSIAW
Sbjct: 1   MSRPPVLHPLAVRIAHWLNAFAIACMISSGWGIYNASPLFPFKFASWMTLGGWLGGSIAW 60

Query: 61  HLAAMWLLVVNGLFYLLYGSVSGHFRRHLLPLHMSEVLQDARQALRFRLPHQPGVYNAVQ 120
           H AAMWLLV NGLFYLLYG++SGHFRRHLLP+   EV +DA QALR +LPHQPGVYNAVQ
Sbjct: 61  HFAAMWLLVANGLFYLLYGALSGHFRRHLLPVRAGEVWRDAGQALRLKLPHQPGVYNAVQ 120

Query: 121 KLLYWVVILLGILVVLSGLAIWKPVQLDGLAALLGGFDVARKVHFVAMAGIAGFVVVHLT 180
           KLLYW V+LLGILVVLSGLA+WKPVQLD LA L GGFD ARKVHF AMAGIA FVVVHL 
Sbjct: 121 KLLYWAVMLLGILVVLSGLALWKPVQLDWLADLFGGFDFARKVHFAAMAGIAAFVVVHLA 180

Query: 181 LVAIVPKTLIPMLTGGRDKQAISS 204
           LVAIVP+TLIPM TGG DK+A +S
Sbjct: 181 LVAIVPRTLIPMFTGGHDKKANAS 204


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.143    0.471 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 617,749
Number of extensions: 22809
Number of successful extensions: 119
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,236,335
Effective search space: 152069205
Effective search space used: 152069205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)