BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1134.p
         (520 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310648|ref|YP_003774740.1| hypothetical protein Hsero_1316...   687   0.0  

>gi|300310648|ref|YP_003774740.1| hypothetical protein Hsero_1316
           [Herbaspirillum seropedicae SmR1]
          Length = 512

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/508 (76%), Positives = 423/508 (83%)

Query: 1   MSTQEQRFIEAIASQAKEGVDLQPLLDALRDWLSDLRQALQAGQIDASGLQATSPLAQRI 60
           M+ QEQ+FI+AI    +   DLQP+L ALR WLS L QALQ G+IDA GLQ  S LA+RI
Sbjct: 1   MNRQEQQFIDAIGRTGQGEADLQPVLAALRGWLSALDQALQDGRIDAVGLQPGSALARRI 60

Query: 61  TALHQALAHQQQRRHQQWLALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFAQ 120
             LH  LA Q QRR QQW+ALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRF Q
Sbjct: 61  AGLHDDLARQAQRRQQQWMALAPARALAQRFEGKLMLLVFGKFNAGKSSLCNFLAQRFRQ 120

Query: 121 RRQTVQYFHLHDGQLVESEESFHEGATETTARLQGVCLGDGLVLLDTPGLHSATDDNAAL 180
           R Q VQYFHL DGQL+ES  +FHEGATETTARLQGVCLGDGLVLLDTPGLHSATDDNAAL
Sbjct: 121 RGQAVQYFHLQDGQLIESASAFHEGATETTARLQGVCLGDGLVLLDTPGLHSATDDNAAL 180

Query: 181 TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIEEDEVDGQIVK 240
           TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVI+EDE+DGQIVK
Sbjct: 181 TQRFLDSADAVLWLTSSTSPGQVQELDELARELRRGKPLLPVLTRSDVIDEDELDGQIVK 240

Query: 241 RLRNKSAANRADQEADVRARAADKLQSLGVALSQLKTPVSVSAYVARSQGADAAVMEAAG 300
           RLRNKS ANRADQEADV ARA DKLQ+LGVALSQLK PVS+SA+VAR++GADAA ME AG
Sbjct: 241 RLRNKSPANRADQEADVHARARDKLQALGVALSQLKPPVSLSAHVARTEGADAAAMEGAG 300

Query: 301 FERLYATLLALLAPAMAYRERKPAEVLLHHLQEDVLAPLQDQTLPALADLQQLISAQQQA 360
           F+R YA L ALLAPA+AYR+RKPAEVLLHHLQEDVLAPL  QTLPAL  LQQL+  +Q  
Sbjct: 301 FDRFYAALSALLAPALAYRDRKPAEVLLHHLQEDVLAPLLGQTLPALQALQQLLEQEQAT 360

Query: 361 LPTQQARIVQLAWRELMPGLPALLEKHAATGDVAAVLASLQAPLMHAFERHARAVLDHHV 420
           LP Q ARIVQLAWRE+MPGLPALLE+HAA  D+AAVL ++Q  +MHAFERHARAVLD HV
Sbjct: 361 LPAQCARIVQLAWREIMPGLPALLEQHAAADDLAAVLDTVQPLMMHAFERHARAVLDSHV 420

Query: 421 LSAPAVVPLALPTGVAYEAAVAGDLPPSYEKLYAALGQTVQVSLEQLAGEVAAICTARLA 480
           L+APA   + LP    YE A A DLPPSYEKLY ALGQ +Q+SLE LA     +C ARL 
Sbjct: 421 LAAPAAQGIVLPADAGYERAFADDLPPSYEKLYDALGQAIQLSLEALAETTGQVCAARLE 480

Query: 481 ALSEALERKQDIIALYAQRLGEIEHSLR 508
           ALS A+ RKQ II  Y  +LGEIE  LR
Sbjct: 481 ALSAAVHRKQQIIHRYTGQLGEIEQGLR 508


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,295,051
Number of extensions: 47042
Number of successful extensions: 243
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,198,455
Effective search space: 516534105
Effective search space used: 516534105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)